Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1920 and Shewana3_1921 are separated by 1 nucleotides Shewana3_1921 and Shewana3_1922 are separated by 215 nucleotides
Shewana3_1920: Shewana3_1920 - hypothetical protein (RefSeq), at 2,282,229 to 2,283,893
_1920
Shewana3_1921: Shewana3_1921 - hypothetical protein (RefSeq), at 2,283,895 to 2,284,494
_1921
Shewana3_1922: Shewana3_1922 - sodium/sulphate symporter (RefSeq), at 2,284,710 to 2,286,098
_1922
Position (kb)
2283
2284
2285 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2282.938 kb on + strand, within Shewana3_1920 at 2282.987 kb on + strand, within Shewana3_1920 at 2283.186 kb on - strand, within Shewana3_1920 at 2283.191 kb on + strand, within Shewana3_1920 at 2283.353 kb on - strand, within Shewana3_1920 at 2283.565 kb on + strand, within Shewana3_1920 at 2283.702 kb on + strand, within Shewana3_1920 at 2283.777 kb on - strand at 2283.963 kb on - strand, within Shewana3_1921 at 2284.463 kb on + strand at 2284.463 kb on + strand at 2284.486 kb on + strand at 2284.588 kb on + strand at 2284.599 kb on + strand at 2284.707 kb on + strand at 2284.735 kb on + strand at 2284.776 kb on - strand at 2284.792 kb on - strand at 2284.922 kb on + strand, within Shewana3_1922 at 2285.094 kb on + strand, within Shewana3_1922 at 2285.237 kb on + strand, within Shewana3_1922 at 2285.460 kb on - strand, within Shewana3_1922
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,282,938 + Shewana3_1920 0.43 -1.7 2,282,987 + Shewana3_1920 0.46 -1.0 2,283,186 - Shewana3_1920 0.57 -0.1 2,283,191 + Shewana3_1920 0.58 +1.1 2,283,353 - Shewana3_1920 0.68 -1.1 2,283,565 + Shewana3_1920 0.80 -2.9 2,283,702 + Shewana3_1920 0.88 -1.3 2,283,777 - +0.8 2,283,963 - Shewana3_1921 0.11 -1.1 2,284,463 + -0.1 2,284,463 + -0.4 2,284,486 + +1.1 2,284,588 + +0.7 2,284,599 + -0.1 2,284,707 + +0.9 2,284,735 + -0.8 2,284,776 - -1.4 2,284,792 - -1.5 2,284,922 + Shewana3_1922 0.15 -0.2 2,285,094 + Shewana3_1922 0.28 +2.9 2,285,237 + Shewana3_1922 0.38 -0.1 2,285,460 - Shewana3_1922 0.54 +1.4
Or see this region's nucleotide sequence