Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1884 and Shewana3_1885 are separated by 10 nucleotides Shewana3_1885 and Shewana3_1886 are separated by 113 nucleotides
Shewana3_1884: Shewana3_1884 - ApbE family lipoprotein (RefSeq), at 2,231,229 to 2,232,131
_1884
Shewana3_1885: Shewana3_1885 - two component transcriptional regulator (RefSeq), at 2,232,142 to 2,232,801
_1885
Shewana3_1886: Shewana3_1886 - ATPase domain-containing protein (RefSeq), at 2,232,915 to 2,234,309
_1886
Position (kb)
2232
2233 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2231.221 kb on - strand at 2231.508 kb on + strand, within Shewana3_1884 at 2231.620 kb on - strand, within Shewana3_1884 at 2231.679 kb on + strand, within Shewana3_1884 at 2231.877 kb on - strand, within Shewana3_1884 at 2232.065 kb on + strand at 2232.132 kb on + strand at 2232.192 kb on - strand at 2232.231 kb on + strand, within Shewana3_1885 at 2232.236 kb on - strand, within Shewana3_1885 at 2232.350 kb on - strand, within Shewana3_1885 at 2232.658 kb on + strand, within Shewana3_1885 at 2232.744 kb on - strand at 2232.761 kb on - strand at 2232.845 kb on + strand at 2232.930 kb on + strand at 2233.195 kb on + strand, within Shewana3_1886 at 2233.470 kb on + strand, within Shewana3_1886 at 2233.583 kb on + strand, within Shewana3_1886 at 2233.587 kb on - strand, within Shewana3_1886 at 2233.598 kb on + strand, within Shewana3_1886 at 2233.606 kb on - strand, within Shewana3_1886 at 2233.670 kb on + strand, within Shewana3_1886 at 2233.751 kb on + strand, within Shewana3_1886 at 2233.771 kb on + strand, within Shewana3_1886
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,231,221 - -1.6 2,231,508 + Shewana3_1884 0.31 -0.3 2,231,620 - Shewana3_1884 0.43 +0.8 2,231,679 + Shewana3_1884 0.50 -0.2 2,231,877 - Shewana3_1884 0.72 +0.3 2,232,065 + +0.0 2,232,132 + -2.1 2,232,192 - -0.1 2,232,231 + Shewana3_1885 0.13 -0.6 2,232,236 - Shewana3_1885 0.14 -1.2 2,232,350 - Shewana3_1885 0.32 -1.5 2,232,658 + Shewana3_1885 0.78 -0.2 2,232,744 - +1.3 2,232,761 - -1.3 2,232,845 + -0.3 2,232,930 + -3.7 2,233,195 + Shewana3_1886 0.20 +1.8 2,233,470 + Shewana3_1886 0.40 +0.3 2,233,583 + Shewana3_1886 0.48 -1.9 2,233,587 - Shewana3_1886 0.48 -0.5 2,233,598 + Shewana3_1886 0.49 -1.2 2,233,606 - Shewana3_1886 0.50 +0.5 2,233,670 + Shewana3_1886 0.54 -0.9 2,233,751 + Shewana3_1886 0.60 +1.1 2,233,771 + Shewana3_1886 0.61 -1.5
Or see this region's nucleotide sequence