Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1870 and Shewana3_1871 overlap by 1 nucleotides Shewana3_1871 and Shewana3_1872 are separated by 210 nucleotides Shewana3_1872 and Shewana3_1873 overlap by 17 nucleotides
Shewana3_1870: Shewana3_1870 - hydrogenase assembly chaperone hypC/hupF (RefSeq), at 2,214,687 to 2,214,932
_1870
Shewana3_1871: Shewana3_1871 - hydrogenase accessory protein HypB (RefSeq), at 2,214,932 to 2,215,693
_1871
Shewana3_1872: Shewana3_1872 - oxidoreductase alpha (molybdopterin) subunit (RefSeq), at 2,215,904 to 2,218,225
_1872
Shewana3_1873: Shewana3_1873 - formate dehydrogenase family accessory protein FdhD (RefSeq), at 2,218,209 to 2,219,069
_1873
Position (kb)
2215
2216
2217
2218
2219 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2215.304 kb on + strand, within Shewana3_1871 at 2215.386 kb on + strand, within Shewana3_1871 at 2215.441 kb on - strand, within Shewana3_1871 at 2215.532 kb on + strand, within Shewana3_1871 at 2215.532 kb on + strand, within Shewana3_1871 at 2215.540 kb on - strand, within Shewana3_1871 at 2215.540 kb on - strand, within Shewana3_1871 at 2215.666 kb on + strand at 2215.717 kb on - strand at 2215.900 kb on - strand at 2215.943 kb on + strand at 2215.990 kb on + strand at 2216.074 kb on + strand at 2216.089 kb on - strand at 2216.151 kb on - strand, within Shewana3_1872 at 2216.201 kb on - strand, within Shewana3_1872 at 2216.302 kb on + strand, within Shewana3_1872 at 2216.303 kb on + strand, within Shewana3_1872 at 2216.308 kb on + strand, within Shewana3_1872 at 2216.336 kb on + strand, within Shewana3_1872 at 2216.473 kb on - strand, within Shewana3_1872 at 2216.727 kb on + strand, within Shewana3_1872 at 2216.741 kb on - strand, within Shewana3_1872 at 2217.054 kb on + strand, within Shewana3_1872 at 2217.062 kb on - strand, within Shewana3_1872 at 2217.062 kb on - strand, within Shewana3_1872 at 2217.196 kb on - strand, within Shewana3_1872 at 2217.672 kb on + strand, within Shewana3_1872 at 2217.821 kb on - strand, within Shewana3_1872 at 2218.488 kb on + strand, within Shewana3_1873 at 2218.638 kb on + strand, within Shewana3_1873 at 2218.756 kb on - strand, within Shewana3_1873 at 2218.756 kb on - strand, within Shewana3_1873 at 2218.916 kb on + strand, within Shewana3_1873 at 2218.923 kb on + strand, within Shewana3_1873 at 2219.030 kb on + strand at 2219.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,215,304 + Shewana3_1871 0.49 +1.8 2,215,386 + Shewana3_1871 0.60 +1.1 2,215,441 - Shewana3_1871 0.67 +0.5 2,215,532 + Shewana3_1871 0.79 -0.5 2,215,532 + Shewana3_1871 0.79 +2.8 2,215,540 - Shewana3_1871 0.80 +0.6 2,215,540 - Shewana3_1871 0.80 -1.2 2,215,666 + -1.0 2,215,717 - +0.8 2,215,900 - +1.3 2,215,943 + +1.3 2,215,990 + +1.3 2,216,074 + -0.5 2,216,089 - +1.0 2,216,151 - Shewana3_1872 0.11 -0.5 2,216,201 - Shewana3_1872 0.13 +1.3 2,216,302 + Shewana3_1872 0.17 +1.8 2,216,303 + Shewana3_1872 0.17 +2.8 2,216,308 + Shewana3_1872 0.17 -0.3 2,216,336 + Shewana3_1872 0.19 +1.3 2,216,473 - Shewana3_1872 0.25 -1.4 2,216,727 + Shewana3_1872 0.35 -0.2 2,216,741 - Shewana3_1872 0.36 -0.2 2,217,054 + Shewana3_1872 0.50 +2.8 2,217,062 - Shewana3_1872 0.50 -1.6 2,217,062 - Shewana3_1872 0.50 -1.5 2,217,196 - Shewana3_1872 0.56 +0.1 2,217,672 + Shewana3_1872 0.76 +0.0 2,217,821 - Shewana3_1872 0.83 -1.1 2,218,488 + Shewana3_1873 0.32 +1.9 2,218,638 + Shewana3_1873 0.50 +1.9 2,218,756 - Shewana3_1873 0.64 -0.3 2,218,756 - Shewana3_1873 0.64 -0.1 2,218,916 + Shewana3_1873 0.82 -0.5 2,218,923 + Shewana3_1873 0.83 +0.5 2,219,030 + +0.9 2,219,120 - +0.5
Or see this region's nucleotide sequence