Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1868 and Shewana3_1869 overlap by 8 nucleotides Shewana3_1869 and Shewana3_1870 are separated by 58 nucleotides Shewana3_1870 and Shewana3_1871 overlap by 1 nucleotides
Shewana3_1868: Shewana3_1868 - hydrogenase expression/formation protein HypE (RefSeq), at 2,212,477 to 2,213,496
_1868
Shewana3_1869: Shewana3_1869 - hydrogenase expression/formation protein HypD (RefSeq), at 2,213,489 to 2,214,628
_1869
Shewana3_1870: Shewana3_1870 - hydrogenase assembly chaperone hypC/hupF (RefSeq), at 2,214,687 to 2,214,932
_1870
Shewana3_1871: Shewana3_1871 - hydrogenase accessory protein HypB (RefSeq), at 2,214,932 to 2,215,693
_1871
Position (kb)
2213
2214
2215 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2212.494 kb on - strand at 2212.520 kb on - strand at 2212.649 kb on - strand, within Shewana3_1868 at 2212.717 kb on + strand, within Shewana3_1868 at 2212.721 kb on - strand, within Shewana3_1868 at 2213.172 kb on - strand, within Shewana3_1868 at 2213.334 kb on + strand, within Shewana3_1868 at 2213.382 kb on + strand, within Shewana3_1868 at 2213.448 kb on + strand at 2213.664 kb on + strand, within Shewana3_1869 at 2213.672 kb on - strand, within Shewana3_1869 at 2213.770 kb on + strand, within Shewana3_1869 at 2213.828 kb on - strand, within Shewana3_1869 at 2213.828 kb on - strand, within Shewana3_1869 at 2213.828 kb on - strand, within Shewana3_1869 at 2214.031 kb on - strand, within Shewana3_1869 at 2214.257 kb on + strand, within Shewana3_1869 at 2214.284 kb on - strand, within Shewana3_1869 at 2214.345 kb on - strand, within Shewana3_1869 at 2214.489 kb on + strand, within Shewana3_1869 at 2214.813 kb on + strand, within Shewana3_1870 at 2215.304 kb on + strand, within Shewana3_1871 at 2215.386 kb on + strand, within Shewana3_1871 at 2215.441 kb on - strand, within Shewana3_1871 at 2215.532 kb on + strand, within Shewana3_1871 at 2215.532 kb on + strand, within Shewana3_1871 at 2215.540 kb on - strand, within Shewana3_1871 at 2215.540 kb on - strand, within Shewana3_1871
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,212,494 - +0.3 2,212,520 - +0.5 2,212,649 - Shewana3_1868 0.17 +0.9 2,212,717 + Shewana3_1868 0.24 +2.8 2,212,721 - Shewana3_1868 0.24 -1.0 2,213,172 - Shewana3_1868 0.68 +0.0 2,213,334 + Shewana3_1868 0.84 +2.8 2,213,382 + Shewana3_1868 0.89 -0.3 2,213,448 + -0.7 2,213,664 + Shewana3_1869 0.15 +1.3 2,213,672 - Shewana3_1869 0.16 +0.8 2,213,770 + Shewana3_1869 0.25 -0.6 2,213,828 - Shewana3_1869 0.30 +2.8 2,213,828 - Shewana3_1869 0.30 -0.5 2,213,828 - Shewana3_1869 0.30 -2.2 2,214,031 - Shewana3_1869 0.48 -0.7 2,214,257 + Shewana3_1869 0.67 +2.8 2,214,284 - Shewana3_1869 0.70 +1.3 2,214,345 - Shewana3_1869 0.75 -1.5 2,214,489 + Shewana3_1869 0.88 +0.8 2,214,813 + Shewana3_1870 0.51 +0.5 2,215,304 + Shewana3_1871 0.49 +1.8 2,215,386 + Shewana3_1871 0.60 +1.1 2,215,441 - Shewana3_1871 0.67 +0.5 2,215,532 + Shewana3_1871 0.79 -0.5 2,215,532 + Shewana3_1871 0.79 +2.8 2,215,540 - Shewana3_1871 0.80 +0.6 2,215,540 - Shewana3_1871 0.80 -1.2
Or see this region's nucleotide sequence