Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1869

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1868 and Shewana3_1869 overlap by 8 nucleotidesShewana3_1869 and Shewana3_1870 are separated by 58 nucleotidesShewana3_1870 and Shewana3_1871 overlap by 1 nucleotides Shewana3_1868: Shewana3_1868 - hydrogenase expression/formation protein HypE (RefSeq), at 2,212,477 to 2,213,496 _1868 Shewana3_1869: Shewana3_1869 - hydrogenase expression/formation protein HypD (RefSeq), at 2,213,489 to 2,214,628 _1869 Shewana3_1870: Shewana3_1870 - hydrogenase assembly chaperone hypC/hupF (RefSeq), at 2,214,687 to 2,214,932 _1870 Shewana3_1871: Shewana3_1871 - hydrogenase accessory protein HypB (RefSeq), at 2,214,932 to 2,215,693 _1871 Position (kb) 2213 2214 2215Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2212.494 kb on - strandat 2212.520 kb on - strandat 2212.649 kb on - strand, within Shewana3_1868at 2212.717 kb on + strand, within Shewana3_1868at 2212.721 kb on - strand, within Shewana3_1868at 2213.172 kb on - strand, within Shewana3_1868at 2213.334 kb on + strand, within Shewana3_1868at 2213.382 kb on + strand, within Shewana3_1868at 2213.448 kb on + strandat 2213.664 kb on + strand, within Shewana3_1869at 2213.672 kb on - strand, within Shewana3_1869at 2213.770 kb on + strand, within Shewana3_1869at 2213.828 kb on - strand, within Shewana3_1869at 2213.828 kb on - strand, within Shewana3_1869at 2213.828 kb on - strand, within Shewana3_1869at 2214.031 kb on - strand, within Shewana3_1869at 2214.257 kb on + strand, within Shewana3_1869at 2214.284 kb on - strand, within Shewana3_1869at 2214.345 kb on - strand, within Shewana3_1869at 2214.489 kb on + strand, within Shewana3_1869at 2214.813 kb on + strand, within Shewana3_1870at 2215.304 kb on + strand, within Shewana3_1871at 2215.386 kb on + strand, within Shewana3_1871at 2215.441 kb on - strand, within Shewana3_1871at 2215.532 kb on + strand, within Shewana3_1871at 2215.532 kb on + strand, within Shewana3_1871at 2215.540 kb on - strand, within Shewana3_1871at 2215.540 kb on - strand, within Shewana3_1871

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,212,494 - +0.3
2,212,520 - +0.5
2,212,649 - Shewana3_1868 0.17 +0.9
2,212,717 + Shewana3_1868 0.24 +2.8
2,212,721 - Shewana3_1868 0.24 -1.0
2,213,172 - Shewana3_1868 0.68 +0.0
2,213,334 + Shewana3_1868 0.84 +2.8
2,213,382 + Shewana3_1868 0.89 -0.3
2,213,448 + -0.7
2,213,664 + Shewana3_1869 0.15 +1.3
2,213,672 - Shewana3_1869 0.16 +0.8
2,213,770 + Shewana3_1869 0.25 -0.6
2,213,828 - Shewana3_1869 0.30 +2.8
2,213,828 - Shewana3_1869 0.30 -0.5
2,213,828 - Shewana3_1869 0.30 -2.2
2,214,031 - Shewana3_1869 0.48 -0.7
2,214,257 + Shewana3_1869 0.67 +2.8
2,214,284 - Shewana3_1869 0.70 +1.3
2,214,345 - Shewana3_1869 0.75 -1.5
2,214,489 + Shewana3_1869 0.88 +0.8
2,214,813 + Shewana3_1870 0.51 +0.5
2,215,304 + Shewana3_1871 0.49 +1.8
2,215,386 + Shewana3_1871 0.60 +1.1
2,215,441 - Shewana3_1871 0.67 +0.5
2,215,532 + Shewana3_1871 0.79 -0.5
2,215,532 + Shewana3_1871 0.79 +2.8
2,215,540 - Shewana3_1871 0.80 +0.6
2,215,540 - Shewana3_1871 0.80 -1.2

Or see this region's nucleotide sequence