Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1861 and Shewana3_1862 are separated by 500 nucleotides Shewana3_1862 and pheS are separated by 434 nucleotides
Shewana3_1861: Shewana3_1861 - TonB-dependent receptor (RefSeq), at 2,202,821 to 2,204,782
_1861
Shewana3_1862: Shewana3_1862 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,205,283 to 2,206,800
_1862
Shewana3_1863: pheS - phenylalanyl-tRNA synthetase subunit alpha (RefSeq), at 2,207,235 to 2,208,254
pheS
Position (kb)
2205
2206
2207 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2204.324 kb on + strand, within Shewana3_1861 at 2204.401 kb on - strand, within Shewana3_1861 at 2204.540 kb on - strand, within Shewana3_1861 at 2204.540 kb on - strand, within Shewana3_1861 at 2204.961 kb on + strand at 2204.969 kb on - strand at 2204.969 kb on - strand at 2204.969 kb on - strand at 2204.969 kb on - strand at 2205.289 kb on - strand at 2205.296 kb on - strand at 2205.307 kb on - strand at 2205.354 kb on - strand at 2206.042 kb on + strand, within Shewana3_1862 at 2206.042 kb on + strand, within Shewana3_1862 at 2206.050 kb on - strand, within Shewana3_1862 at 2206.050 kb on - strand, within Shewana3_1862 at 2206.219 kb on - strand, within Shewana3_1862 at 2207.073 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,204,324 + Shewana3_1861 0.77 -0.3 2,204,401 - Shewana3_1861 0.81 +0.1 2,204,540 - Shewana3_1861 0.88 -0.6 2,204,540 - Shewana3_1861 0.88 +0.7 2,204,961 + +0.9 2,204,969 - +0.0 2,204,969 - +1.8 2,204,969 - +2.8 2,204,969 - -0.6 2,205,289 - +1.3 2,205,296 - +0.8 2,205,307 - +1.1 2,205,354 - +1.3 2,206,042 + Shewana3_1862 0.50 -1.7 2,206,042 + Shewana3_1862 0.50 -0.9 2,206,050 - Shewana3_1862 0.51 +1.5 2,206,050 - Shewana3_1862 0.51 +0.8 2,206,219 - Shewana3_1862 0.62 +1.1 2,207,073 + +0.0
Or see this region's nucleotide sequence