Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1825 and Shewana3_1826 are separated by 17 nucleotides Shewana3_1826 and Shewana3_1827 are separated by 210 nucleotides Shewana3_1827 and Shewana3_1828 overlap by 8 nucleotides
Shewana3_1825: Shewana3_1825 - ATPase-like protein (RefSeq), at 2,160,481 to 2,163,678
_1825
Shewana3_1826: Shewana3_1826 - hypothetical protein (RefSeq), at 2,163,696 to 2,164,388
_1826
Shewana3_1827: Shewana3_1827 - hypothetical protein (RefSeq), at 2,164,599 to 2,165,444
_1827
Shewana3_1828: Shewana3_1828 - hypothetical protein (RefSeq), at 2,165,437 to 2,166,396
_1828
Position (kb)
2164
2165
2166 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2163.784 kb on + strand, within Shewana3_1826 at 2163.784 kb on + strand, within Shewana3_1826 at 2163.789 kb on + strand, within Shewana3_1826 at 2163.799 kb on - strand, within Shewana3_1826 at 2163.945 kb on + strand, within Shewana3_1826 at 2164.293 kb on + strand, within Shewana3_1826 at 2164.341 kb on + strand at 2164.437 kb on - strand at 2164.494 kb on + strand at 2164.843 kb on + strand, within Shewana3_1827 at 2164.844 kb on - strand, within Shewana3_1827 at 2164.920 kb on + strand, within Shewana3_1827 at 2165.269 kb on - strand, within Shewana3_1827 at 2165.762 kb on - strand, within Shewana3_1828 at 2165.793 kb on + strand, within Shewana3_1828 at 2165.940 kb on - strand, within Shewana3_1828 at 2165.948 kb on - strand, within Shewana3_1828 at 2166.017 kb on + strand, within Shewana3_1828 at 2166.117 kb on - strand, within Shewana3_1828 at 2166.245 kb on - strand, within Shewana3_1828 at 2166.297 kb on - strand, within Shewana3_1828 at 2166.297 kb on - strand, within Shewana3_1828 at 2166.297 kb on - strand, within Shewana3_1828
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,163,784 + Shewana3_1826 0.13 -0.6 2,163,784 + Shewana3_1826 0.13 +0.8 2,163,789 + Shewana3_1826 0.13 +0.2 2,163,799 - Shewana3_1826 0.15 -1.3 2,163,945 + Shewana3_1826 0.36 +0.4 2,164,293 + Shewana3_1826 0.86 -0.5 2,164,341 + -0.3 2,164,437 - +0.8 2,164,494 + -0.1 2,164,843 + Shewana3_1827 0.29 -0.9 2,164,844 - Shewana3_1827 0.29 -1.0 2,164,920 + Shewana3_1827 0.38 -0.8 2,165,269 - Shewana3_1827 0.79 +2.8 2,165,762 - Shewana3_1828 0.34 -0.9 2,165,793 + Shewana3_1828 0.37 +1.8 2,165,940 - Shewana3_1828 0.52 -1.1 2,165,948 - Shewana3_1828 0.53 -0.1 2,166,017 + Shewana3_1828 0.60 +0.2 2,166,117 - Shewana3_1828 0.71 -1.2 2,166,245 - Shewana3_1828 0.84 +1.1 2,166,297 - Shewana3_1828 0.90 +0.4 2,166,297 - Shewana3_1828 0.90 -0.1 2,166,297 - Shewana3_1828 0.90 -1.7
Or see this region's nucleotide sequence