Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1815 and Shewana3_1816 are separated by 96 nucleotides Shewana3_1816 and Shewana3_1817 are separated by 4 nucleotides Shewana3_1817 and Shewana3_1818 are separated by 15 nucleotides
Shewana3_1815: Shewana3_1815 - hypothetical protein (RefSeq), at 2,142,170 to 2,142,850
_1815
Shewana3_1816: Shewana3_1816 - hypothetical protein (RefSeq), at 2,142,947 to 2,143,714
_1816
Shewana3_1817: Shewana3_1817 - hypothetical protein (RefSeq), at 2,143,719 to 2,144,261
_1817
Shewana3_1818: Shewana3_1818 - hypothetical protein (RefSeq), at 2,144,277 to 2,147,750
_1818
Position (kb)
2142
2143
2144 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2141.980 kb on + strand at 2142.285 kb on + strand, within Shewana3_1815 at 2142.293 kb on - strand, within Shewana3_1815 at 2142.295 kb on + strand, within Shewana3_1815 at 2142.435 kb on - strand, within Shewana3_1815 at 2142.505 kb on + strand, within Shewana3_1815 at 2142.740 kb on + strand, within Shewana3_1815 at 2142.799 kb on - strand at 2143.134 kb on + strand, within Shewana3_1816 at 2143.469 kb on - strand, within Shewana3_1816 at 2143.773 kb on + strand at 2143.780 kb on - strand, within Shewana3_1817 at 2143.874 kb on + strand, within Shewana3_1817 at 2143.874 kb on + strand, within Shewana3_1817 at 2143.874 kb on + strand, within Shewana3_1817 at 2143.887 kb on - strand, within Shewana3_1817 at 2143.974 kb on - strand, within Shewana3_1817 at 2144.116 kb on + strand, within Shewana3_1817 at 2144.126 kb on + strand, within Shewana3_1817 at 2144.360 kb on + strand at 2144.368 kb on - strand at 2144.368 kb on - strand at 2144.386 kb on + strand at 2144.386 kb on + strand at 2144.386 kb on + strand at 2144.386 kb on + strand at 2144.430 kb on + strand at 2144.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,141,980 + -0.5 2,142,285 + Shewana3_1815 0.17 -0.8 2,142,293 - Shewana3_1815 0.18 +2.8 2,142,295 + Shewana3_1815 0.18 -0.3 2,142,435 - Shewana3_1815 0.39 +1.8 2,142,505 + Shewana3_1815 0.49 +3.3 2,142,740 + Shewana3_1815 0.84 +0.3 2,142,799 - -0.3 2,143,134 + Shewana3_1816 0.24 -0.2 2,143,469 - Shewana3_1816 0.68 -0.5 2,143,773 + -0.5 2,143,780 - Shewana3_1817 0.11 +1.8 2,143,874 + Shewana3_1817 0.29 +0.8 2,143,874 + Shewana3_1817 0.29 +0.6 2,143,874 + Shewana3_1817 0.29 -0.8 2,143,887 - Shewana3_1817 0.31 +0.5 2,143,974 - Shewana3_1817 0.47 +2.8 2,144,116 + Shewana3_1817 0.73 +0.4 2,144,126 + Shewana3_1817 0.75 -0.8 2,144,360 + -0.6 2,144,368 - +0.2 2,144,368 - +2.8 2,144,386 + -0.5 2,144,386 + +1.2 2,144,386 + +0.7 2,144,386 + -1.1 2,144,430 + +0.6 2,144,490 + -0.3
Or see this region's nucleotide sequence