Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1765 and tmk overlap by 4 nucleotides tmk and Shewana3_1767 overlap by 7 nucleotides Shewana3_1767 and Shewana3_1768 are separated by 6 nucleotides Shewana3_1768 and Shewana3_1769 are separated by 352 nucleotides
Shewana3_1765: Shewana3_1765 - aminodeoxychorismate lyase (RefSeq), at 2,079,266 to 2,080,276
_1765
Shewana3_1766: tmk - thymidylate kinase (RefSeq), at 2,080,273 to 2,080,902
tmk
Shewana3_1767: Shewana3_1767 - DNA polymerase III, delta prime subunit (RefSeq), at 2,080,896 to 2,081,852
_1767
Shewana3_1768: Shewana3_1768 - type IV pilus biogenesis protein pilZ (RefSeq), at 2,081,859 to 2,082,185
_1768
Shewana3_1769: Shewana3_1769 - TatD family hydrolase (RefSeq), at 2,082,538 to 2,083,338
_1769
Position (kb)
2080
2081
2082 Strain fitness (log2 ratio)
-1
0
1
2 at 2080.078 kb on + strand, within Shewana3_1765 at 2081.887 kb on + strand at 2082.021 kb on - strand, within Shewana3_1768 at 2082.056 kb on + strand, within Shewana3_1768 at 2082.165 kb on + strand at 2082.180 kb on + strand at 2082.180 kb on + strand at 2082.188 kb on - strand at 2082.382 kb on + strand at 2082.464 kb on - strand at 2082.608 kb on + strand at 2082.608 kb on + strand at 2082.767 kb on + strand, within Shewana3_1769
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,080,078 + Shewana3_1765 0.80 +1.1 2,081,887 + +0.7 2,082,021 - Shewana3_1768 0.50 +1.7 2,082,056 + Shewana3_1768 0.60 +1.7 2,082,165 + -0.3 2,082,180 + +0.9 2,082,180 + -0.1 2,082,188 - -1.4 2,082,382 + -0.6 2,082,464 - -1.0 2,082,608 + +2.1 2,082,608 + +0.0 2,082,767 + Shewana3_1769 0.29 +0.4
Or see this region's nucleotide sequence