Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aat and Shewana3_1757 are separated by 81 nucleotides Shewana3_1757 and Shewana3_1758 are separated by 60 nucleotides Shewana3_1758 and Shewana3_1759 are separated by 109 nucleotides
Shewana3_1756: aat - leucyl/phenylalanyl-tRNA--protein transferase (RefSeq), at 2,070,388 to 2,071,098
aat
Shewana3_1757: Shewana3_1757 - 17 kDa surface antigen (RefSeq), at 2,071,180 to 2,071,623
_1757
Shewana3_1758: Shewana3_1758 - hypothetical protein (RefSeq), at 2,071,684 to 2,072,436
_1758
Shewana3_1759: Shewana3_1759 - hypothetical protein (RefSeq), at 2,072,546 to 2,073,502
_1759
Position (kb)
2071
2072
2073 Strain fitness (log2 ratio)
-1
0
1
2 at 2071.334 kb on + strand, within Shewana3_1757 at 2071.398 kb on - strand, within Shewana3_1757 at 2071.435 kb on - strand, within Shewana3_1757 at 2071.780 kb on + strand, within Shewana3_1758 at 2071.795 kb on + strand, within Shewana3_1758 at 2072.228 kb on - strand, within Shewana3_1758 at 2072.421 kb on + strand at 2072.439 kb on - strand at 2072.485 kb on + strand at 2072.493 kb on - strand at 2072.544 kb on + strand at 2072.544 kb on + strand at 2072.544 kb on + strand at 2072.562 kb on - strand at 2072.599 kb on - strand at 2072.657 kb on + strand, within Shewana3_1759 at 2072.725 kb on - strand, within Shewana3_1759 at 2072.785 kb on + strand, within Shewana3_1759 at 2072.894 kb on + strand, within Shewana3_1759 at 2073.036 kb on - strand, within Shewana3_1759 at 2073.172 kb on + strand, within Shewana3_1759 at 2073.328 kb on - strand, within Shewana3_1759 at 2073.427 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,071,334 + Shewana3_1757 0.35 -0.7 2,071,398 - Shewana3_1757 0.49 +1.7 2,071,435 - Shewana3_1757 0.57 +2.7 2,071,780 + Shewana3_1758 0.13 +1.4 2,071,795 + Shewana3_1758 0.15 +1.9 2,072,228 - Shewana3_1758 0.72 +2.7 2,072,421 + +1.6 2,072,439 - -0.7 2,072,485 + +1.7 2,072,493 - +1.7 2,072,544 + +0.7 2,072,544 + +0.1 2,072,544 + +0.7 2,072,562 - -0.1 2,072,599 - -0.5 2,072,657 + Shewana3_1759 0.12 +1.3 2,072,725 - Shewana3_1759 0.19 +1.9 2,072,785 + Shewana3_1759 0.25 +1.7 2,072,894 + Shewana3_1759 0.36 +1.1 2,073,036 - Shewana3_1759 0.51 +2.7 2,073,172 + Shewana3_1759 0.65 +2.7 2,073,328 - Shewana3_1759 0.82 +0.9 2,073,427 + -0.6
Or see this region's nucleotide sequence