Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mnmA and Shewana3_1748 are separated by 221 nucleotides Shewana3_1748 and Shewana3_1749 are separated by 73 nucleotides Shewana3_1749 and Shewana3_1750 are separated by 351 nucleotides
Shewana3_1747: mnmA - tRNA-specific 2-thiouridylase MnmA (RefSeq), at 2,060,818 to 2,061,936
mnmA
Shewana3_1748: Shewana3_1748 - NUDIX hydrolase (RefSeq), at 2,062,158 to 2,062,649
_1748
Shewana3_1749: Shewana3_1749 - ribosomal large subunit pseudouridine synthase E (RefSeq), at 2,062,723 to 2,063,532
_1749
Shewana3_1750: Shewana3_1750 - isocitrate dehydrogenase, NADP-dependent (RefSeq), at 2,063,884 to 2,066,109
_1750
Position (kb)
2062
2063
2064 Strain fitness (log2 ratio)
-1
0
1
2 at 2061.995 kb on - strand at 2062.212 kb on - strand, within Shewana3_1748 at 2062.240 kb on + strand, within Shewana3_1748 at 2062.348 kb on + strand, within Shewana3_1748 at 2062.348 kb on + strand, within Shewana3_1748 at 2062.496 kb on - strand, within Shewana3_1748 at 2062.598 kb on + strand, within Shewana3_1748 at 2062.678 kb on + strand at 2062.793 kb on + strand at 2062.966 kb on - strand, within Shewana3_1749 at 2063.049 kb on - strand, within Shewana3_1749 at 2063.127 kb on - strand, within Shewana3_1749 at 2063.141 kb on - strand, within Shewana3_1749 at 2063.318 kb on - strand, within Shewana3_1749 at 2063.345 kb on + strand, within Shewana3_1749 at 2063.345 kb on - strand, within Shewana3_1749 at 2063.424 kb on - strand, within Shewana3_1749 at 2063.468 kb on + strand at 2063.546 kb on - strand at 2063.598 kb on + strand at 2063.598 kb on + strand at 2063.598 kb on + strand at 2063.598 kb on + strand at 2063.598 kb on + strand at 2063.606 kb on - strand at 2063.705 kb on + strand at 2063.705 kb on + strand at 2064.096 kb on + strand at 2064.165 kb on + strand, within Shewana3_1750 at 2064.173 kb on - strand, within Shewana3_1750 at 2064.207 kb on - strand, within Shewana3_1750 at 2064.293 kb on + strand, within Shewana3_1750 at 2064.293 kb on + strand, within Shewana3_1750 at 2064.293 kb on + strand, within Shewana3_1750 at 2064.293 kb on + strand, within Shewana3_1750 at 2064.293 kb on + strand, within Shewana3_1750 at 2064.293 kb on + strand, within Shewana3_1750 at 2064.301 kb on - strand, within Shewana3_1750 at 2064.301 kb on - strand, within Shewana3_1750 at 2064.301 kb on - strand, within Shewana3_1750 at 2064.314 kb on + strand, within Shewana3_1750 at 2064.449 kb on + strand, within Shewana3_1750
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,061,995 - +0.8 2,062,212 - Shewana3_1748 0.11 +1.7 2,062,240 + Shewana3_1748 0.17 +0.2 2,062,348 + Shewana3_1748 0.39 -0.7 2,062,348 + Shewana3_1748 0.39 +0.7 2,062,496 - Shewana3_1748 0.69 -0.1 2,062,598 + Shewana3_1748 0.89 +1.1 2,062,678 + -0.4 2,062,793 + -1.4 2,062,966 - Shewana3_1749 0.30 +0.1 2,063,049 - Shewana3_1749 0.40 +0.3 2,063,127 - Shewana3_1749 0.50 +0.4 2,063,141 - Shewana3_1749 0.52 -0.5 2,063,318 - Shewana3_1749 0.73 -1.0 2,063,345 + Shewana3_1749 0.77 +0.5 2,063,345 - Shewana3_1749 0.77 +1.7 2,063,424 - Shewana3_1749 0.87 +0.6 2,063,468 + +0.3 2,063,546 - -0.8 2,063,598 + +1.8 2,063,598 + +2.3 2,063,598 + +0.9 2,063,598 + +2.4 2,063,598 + +1.0 2,063,606 - -0.6 2,063,705 + -0.3 2,063,705 + +0.7 2,064,096 + +1.4 2,064,165 + Shewana3_1750 0.13 +0.7 2,064,173 - Shewana3_1750 0.13 -1.0 2,064,207 - Shewana3_1750 0.15 +0.7 2,064,293 + Shewana3_1750 0.18 +0.2 2,064,293 + Shewana3_1750 0.18 +0.8 2,064,293 + Shewana3_1750 0.18 +0.6 2,064,293 + Shewana3_1750 0.18 +0.1 2,064,293 + Shewana3_1750 0.18 +1.1 2,064,293 + Shewana3_1750 0.18 +0.1 2,064,301 - Shewana3_1750 0.19 -0.6 2,064,301 - Shewana3_1750 0.19 +0.7 2,064,301 - Shewana3_1750 0.19 +0.1 2,064,314 + Shewana3_1750 0.19 -0.5 2,064,449 + Shewana3_1750 0.25 +0.6
Or see this region's nucleotide sequence