Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1713 and Shewana3_1714 are separated by 379 nucleotides Shewana3_1714 and Shewana3_1715 are separated by 31 nucleotides Shewana3_1715 and fur are separated by 93 nucleotides
Shewana3_1713: Shewana3_1713 - succinyl-CoA synthetase (ADP-forming) alpha subunit (RefSeq), at 2,017,998 to 2,018,870
_1713
Shewana3_1714: Shewana3_1714 - GreA/GreB family elongation factor (RefSeq), at 2,019,250 to 2,019,657
_1714
Shewana3_1715: Shewana3_1715 - GCN5-related N-acetyltransferase (RefSeq), at 2,019,689 to 2,020,201
_1715
Shewana3_1716: fur - ferric uptake regulator (RefSeq), at 2,020,295 to 2,020,726
fur
Position (kb)
2019
2020 Strain fitness (log2 ratio)
-1
0
1 at 2018.964 kb on + strand at 2018.972 kb on - strand at 2019.001 kb on + strand at 2019.070 kb on + strand at 2019.077 kb on + strand at 2019.078 kb on - strand at 2019.080 kb on - strand at 2019.151 kb on - strand at 2019.199 kb on - strand at 2019.204 kb on - strand at 2019.259 kb on - strand at 2019.496 kb on + strand, within Shewana3_1714 at 2019.523 kb on + strand, within Shewana3_1714 at 2019.665 kb on + strand at 2019.915 kb on - strand, within Shewana3_1715 at 2020.143 kb on + strand, within Shewana3_1715
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,018,964 + +1.4 2,018,972 - -0.2 2,019,001 + -0.3 2,019,070 + +0.4 2,019,077 + +1.1 2,019,078 - +0.1 2,019,080 - -0.9 2,019,151 - +0.7 2,019,199 - +0.7 2,019,204 - +1.7 2,019,259 - -0.3 2,019,496 + Shewana3_1714 0.60 +1.4 2,019,523 + Shewana3_1714 0.67 -1.2 2,019,665 + -0.7 2,019,915 - Shewana3_1715 0.44 -0.5 2,020,143 + Shewana3_1715 0.88 -0.2
Or see this region's nucleotide sequence