Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1657 and Shewana3_1658 are separated by 370 nucleotides Shewana3_1658 and Shewana3_1659 overlap by 4 nucleotides
Shewana3_1657: Shewana3_1657 - NlpB/DapX family lipoprotein (RefSeq), at 1,947,167 to 1,948,264
_1657
Shewana3_1658: Shewana3_1658 - RND family efflux transporter MFP subunit (RefSeq), at 1,948,635 to 1,949,717
_1658
Shewana3_1659: Shewana3_1659 - acriflavin resistance protein (RefSeq), at 1,949,714 to 1,952,809
_1659
Position (kb)
1948
1949
1950 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1947.959 kb on + strand, within Shewana3_1657 at 1947.968 kb on + strand, within Shewana3_1657 at 1948.700 kb on + strand at 1948.743 kb on - strand at 1948.785 kb on + strand, within Shewana3_1658 at 1948.952 kb on + strand, within Shewana3_1658 at 1949.071 kb on + strand, within Shewana3_1658 at 1949.078 kb on - strand, within Shewana3_1658 at 1949.150 kb on - strand, within Shewana3_1658 at 1949.222 kb on - strand, within Shewana3_1658 at 1949.858 kb on + strand at 1950.133 kb on + strand, within Shewana3_1659 at 1950.146 kb on - strand, within Shewana3_1659 at 1950.162 kb on + strand, within Shewana3_1659 at 1950.162 kb on + strand, within Shewana3_1659 at 1950.162 kb on + strand, within Shewana3_1659 at 1950.170 kb on - strand, within Shewana3_1659 at 1950.170 kb on - strand, within Shewana3_1659 at 1950.170 kb on - strand, within Shewana3_1659 at 1950.430 kb on - strand, within Shewana3_1659 at 1950.510 kb on + strand, within Shewana3_1659 at 1950.566 kb on - strand, within Shewana3_1659 at 1950.566 kb on - strand, within Shewana3_1659 at 1950.599 kb on - strand, within Shewana3_1659
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,947,959 + Shewana3_1657 0.72 +2.5 1,947,968 + Shewana3_1657 0.73 +2.5 1,948,700 + +2.6 1,948,743 - +1.6 1,948,785 + Shewana3_1658 0.14 +0.6 1,948,952 + Shewana3_1658 0.29 +2.6 1,949,071 + Shewana3_1658 0.40 -0.4 1,949,078 - Shewana3_1658 0.41 -1.9 1,949,150 - Shewana3_1658 0.48 +1.0 1,949,222 - Shewana3_1658 0.54 -0.3 1,949,858 + +0.6 1,950,133 + Shewana3_1659 0.14 +0.4 1,950,146 - Shewana3_1659 0.14 -1.4 1,950,162 + Shewana3_1659 0.14 -0.4 1,950,162 + Shewana3_1659 0.14 +0.7 1,950,162 + Shewana3_1659 0.14 -1.6 1,950,170 - Shewana3_1659 0.15 -0.5 1,950,170 - Shewana3_1659 0.15 +0.8 1,950,170 - Shewana3_1659 0.15 +0.3 1,950,430 - Shewana3_1659 0.23 -0.7 1,950,510 + Shewana3_1659 0.26 +0.0 1,950,566 - Shewana3_1659 0.28 +1.0 1,950,566 - Shewana3_1659 0.28 -0.4 1,950,599 - Shewana3_1659 0.29 -0.0
Or see this region's nucleotide sequence