Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1646

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1644 and Shewana3_1645 are separated by 29 nucleotidesShewana3_1645 and Shewana3_1646 are separated by 98 nucleotidesShewana3_1646 and Shewana3_1647 are separated by 388 nucleotidesShewana3_1647 and Shewana3_1648 are separated by 47 nucleotides Shewana3_1644: Shewana3_1644 - transposase (RefSeq), at 1,935,489 to 1,935,884 _1644 Shewana3_1645: Shewana3_1645 - integrase catalytic subunit (RefSeq), at 1,935,914 to 1,936,717 _1645 Shewana3_1646: Shewana3_1646 - hypothetical protein (RefSeq), at 1,936,816 to 1,938,744 _1646 Shewana3_1647: Shewana3_1647 - hypothetical protein (RefSeq), at 1,939,133 to 1,939,513 _1647 Shewana3_1648: Shewana3_1648 - arsenate reductase (RefSeq), at 1,939,561 to 1,939,911 _1648 Position (kb) 1936 1937 1938 1939Strain fitness (log2 ratio) -2 -1 0 1 2at 1936.821 kb on + strandat 1936.857 kb on + strandat 1936.865 kb on - strandat 1936.865 kb on - strandat 1936.865 kb on - strandat 1936.995 kb on + strandat 1937.011 kb on - strand, within Shewana3_1646at 1937.489 kb on - strand, within Shewana3_1646at 1937.502 kb on - strand, within Shewana3_1646at 1937.673 kb on + strand, within Shewana3_1646at 1937.755 kb on + strand, within Shewana3_1646at 1937.994 kb on - strand, within Shewana3_1646at 1938.016 kb on + strand, within Shewana3_1646at 1938.022 kb on + strand, within Shewana3_1646at 1938.076 kb on - strand, within Shewana3_1646at 1938.091 kb on - strand, within Shewana3_1646at 1938.433 kb on + strand, within Shewana3_1646at 1938.441 kb on - strand, within Shewana3_1646at 1938.597 kb on + strandat 1938.597 kb on + strandat 1938.855 kb on - strandat 1939.078 kb on + strandat 1939.162 kb on + strandat 1939.312 kb on + strand, within Shewana3_1647at 1939.394 kb on - strand, within Shewana3_1647at 1939.409 kb on + strand, within Shewana3_1647at 1939.422 kb on + strand, within Shewana3_1647at 1939.465 kb on + strand, within Shewana3_1647at 1939.500 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,936,821 + -0.4
1,936,857 + +1.6
1,936,865 - -2.6
1,936,865 - +1.3
1,936,865 - -1.7
1,936,995 + -0.0
1,937,011 - Shewana3_1646 0.10 -0.0
1,937,489 - Shewana3_1646 0.35 +0.3
1,937,502 - Shewana3_1646 0.36 +0.6
1,937,673 + Shewana3_1646 0.44 -0.0
1,937,755 + Shewana3_1646 0.49 -1.7
1,937,994 - Shewana3_1646 0.61 +0.6
1,938,016 + Shewana3_1646 0.62 -0.2
1,938,022 + Shewana3_1646 0.63 -0.6
1,938,076 - Shewana3_1646 0.65 +1.6
1,938,091 - Shewana3_1646 0.66 -0.4
1,938,433 + Shewana3_1646 0.84 -0.9
1,938,441 - Shewana3_1646 0.84 -0.2
1,938,597 + +0.1
1,938,597 + +0.7
1,938,855 - -0.0
1,939,078 + +2.6
1,939,162 + +1.0
1,939,312 + Shewana3_1647 0.47 -1.2
1,939,394 - Shewana3_1647 0.69 +1.0
1,939,409 + Shewana3_1647 0.72 -0.4
1,939,422 + Shewana3_1647 0.76 -0.2
1,939,465 + Shewana3_1647 0.87 -0.1
1,939,500 + +0.3

Or see this region's nucleotide sequence