Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1638
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
1,927,630 | + | Shewana3_1637 | 0.31 | +0.8 | |
1,927,758 | - | Shewana3_1637 | 0.41 | -1.2 | |
1,927,853 | + | Shewana3_1637 | 0.49 | +0.6 | |
1,928,147 | - | Shewana3_1637 | 0.72 | -1.0 | |
1,928,287 | - | Shewana3_1637 | 0.83 | -1.8 | |
1,928,319 | - | Shewana3_1637 | 0.85 | -1.5 | |
1,928,778 | + | Shewana3_1638 | 0.11 | +2.0 | |
1,929,165 | + | Shewana3_1638 | 0.31 | -1.6 | |
1,929,320 | + | Shewana3_1638 | 0.39 | +2.6 | |
1,929,328 | - | Shewana3_1638 | 0.39 | +0.2 | |
1,929,335 | - | Shewana3_1638 | 0.40 | +0.2 | |
1,929,358 | - | Shewana3_1638 | 0.41 | +0.2 | |
1,929,441 | + | Shewana3_1638 | 0.45 | +0.2 | |
1,929,589 | + | Shewana3_1638 | 0.53 | +0.4 | |
1,929,616 | + | Shewana3_1638 | 0.54 | -1.0 | |
1,929,643 | - | +1.0 | |||
1,929,684 | + | Shewana3_1638 | 0.58 | -0.2 | |
1,929,692 | - | Shewana3_1638 | 0.58 | +2.6 | |
1,929,750 | - | Shewana3_1638 | 0.61 | +1.6 | |
1,929,888 | + | Shewana3_1638 | 0.68 | -1.6 | |
1,929,907 | + | Shewana3_1638 | 0.69 | +0.6 | |
1,930,162 | + | Shewana3_1638 | 0.82 | +0.2 | |
1,930,210 | - | Shewana3_1638 | 0.85 | +0.6 | |
1,930,444 | + | -0.9 | |||
1,930,509 | - | +1.6 | |||
1,930,759 | - | +2.9 | |||
1,930,759 | - | +1.8 | |||
1,931,392 | + | +0.7 | |||
1,931,480 | - | +0.7 |
Or see this region's nucleotide sequence