Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlmL and Shewana3_1602 overlap by 8 nucleotides Shewana3_1602 and Shewana3_1603 are separated by 1 nucleotides
Shewana3_1601: rlmL - 23S rRNA m(2)G2445 methyltransferase (RefSeq), at 1,878,599 to 1,880,740
rlmL
Shewana3_1602: Shewana3_1602 - glutaredoxin 2 (RefSeq), at 1,880,733 to 1,880,972
_1602
Shewana3_1603: Shewana3_1603 - ABC transporter ATPase component (RefSeq), at 1,880,974 to 1,882,896
_1603
Position (kb) 1880
1881 Strain fitness (log2 ratio) -1
0
1
2 at 1879.748 kb on - strand, within rlmL at 1879.773 kb on + strand, within rlmL at 1879.973 kb on - strand, within rlmL at 1880.107 kb on + strand, within rlmL at 1880.107 kb on + strand, within rlmL at 1880.107 kb on + strand, within rlmL at 1880.120 kb on - strand, within rlmL at 1880.163 kb on - strand, within rlmL at 1880.279 kb on + strand, within rlmL at 1880.298 kb on + strand, within rlmL at 1880.298 kb on + strand, within rlmL at 1880.298 kb on + strand, within rlmL at 1880.448 kb on - strand, within rlmL at 1880.448 kb on - strand, within rlmL at 1880.861 kb on + strand, within Shewana3_1602 at 1880.869 kb on - strand, within Shewana3_1602 at 1880.932 kb on + strand, within Shewana3_1602 at 1881.014 kb on + strand at 1881.014 kb on + strand at 1881.071 kb on + strand at 1881.241 kb on + strand, within Shewana3_1603 at 1881.285 kb on + strand, within Shewana3_1603 at 1881.308 kb on + strand, within Shewana3_1603 at 1881.359 kb on + strand, within Shewana3_1603 at 1881.466 kb on - strand, within Shewana3_1603 at 1881.468 kb on + strand, within Shewana3_1603 at 1881.476 kb on - strand, within Shewana3_1603 at 1881.589 kb on - strand, within Shewana3_1603 at 1881.708 kb on - strand, within Shewana3_1603 at 1881.891 kb on - strand, within Shewana3_1603
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,879,748 - rlmL Shewana3_1601 0.54 -0.9 1,879,773 + rlmL Shewana3_1601 0.55 +0.0 1,879,973 - rlmL Shewana3_1601 0.64 -0.3 1,880,107 + rlmL Shewana3_1601 0.70 +1.1 1,880,107 + rlmL Shewana3_1601 0.70 -0.8 1,880,107 + rlmL Shewana3_1601 0.70 +2.1 1,880,120 - rlmL Shewana3_1601 0.71 -0.3 1,880,163 - rlmL Shewana3_1601 0.73 +0.6 1,880,279 + rlmL Shewana3_1601 0.78 +2.3 1,880,298 + rlmL Shewana3_1601 0.79 -0.9 1,880,298 + rlmL Shewana3_1601 0.79 +1.0 1,880,298 + rlmL Shewana3_1601 0.79 -0.3 1,880,448 - rlmL Shewana3_1601 0.86 -0.0 1,880,448 - rlmL Shewana3_1601 0.86 -0.1 1,880,861 + Shewana3_1602 0.53 +1.3 1,880,869 - Shewana3_1602 0.57 -0.6 1,880,932 + Shewana3_1602 0.83 +2.7 1,881,014 + -1.3 1,881,014 + -0.5 1,881,071 + +0.1 1,881,241 + Shewana3_1603 0.14 +1.6 1,881,285 + Shewana3_1603 0.16 +0.9 1,881,308 + Shewana3_1603 0.17 +0.9 1,881,359 + Shewana3_1603 0.20 -0.4 1,881,466 - Shewana3_1603 0.26 -0.0 1,881,468 + Shewana3_1603 0.26 +0.4 1,881,476 - Shewana3_1603 0.26 +1.6 1,881,589 - Shewana3_1603 0.32 -0.4 1,881,708 - Shewana3_1603 0.38 +0.6 1,881,891 - Shewana3_1603 0.48 -0.1
Or see this region's nucleotide sequence