Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1595 and Shewana3_1596 are separated by 231 nucleotides Shewana3_1596 and Shewana3_1597 are separated by 58 nucleotides Shewana3_1597 and Shewana3_1598 are separated by 10 nucleotides Shewana3_1598 and Shewana3_1599 overlap by 1 nucleotides
Shewana3_1595: Shewana3_1595 - PKD domain-containing protein (RefSeq), at 1,871,397 to 1,874,243
_1595
Shewana3_1596: Shewana3_1596 - hypothetical protein (RefSeq), at 1,874,475 to 1,874,903
_1596
Shewana3_1597: Shewana3_1597 - hypothetical protein (RefSeq), at 1,874,962 to 1,875,858
_1597
Shewana3_1598: Shewana3_1598 - hypothetical protein (RefSeq), at 1,875,869 to 1,876,627
_1598
Shewana3_1599: Shewana3_1599 - hypothetical protein (RefSeq), at 1,876,627 to 1,877,166
_1599
Position (kb) 1874
1875
1876 Strain fitness (log2 ratio) -1
0
1 at 1874.148 kb on - strand at 1874.462 kb on - strand at 1874.486 kb on + strand at 1874.487 kb on + strand at 1874.496 kb on - strand at 1875.573 kb on - strand, within Shewana3_1597 at 1875.827 kb on - strand at 1875.827 kb on - strand at 1875.827 kb on - strand at 1876.370 kb on + strand, within Shewana3_1598 at 1876.671 kb on - strand at 1876.742 kb on + strand, within Shewana3_1599 at 1876.745 kb on - strand, within Shewana3_1599
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,874,148 - -0.3 1,874,462 - +0.2 1,874,486 + -1.0 1,874,487 + -0.0 1,874,496 - -0.4 1,875,573 - Shewana3_1597 0.68 +1.5 1,875,827 - +0.1 1,875,827 - +0.7 1,875,827 - +1.1 1,876,370 + Shewana3_1598 0.66 +0.6 1,876,671 - +0.5 1,876,742 + Shewana3_1599 0.21 +1.6 1,876,745 - Shewana3_1599 0.22 -0.6
Or see this region's nucleotide sequence