Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1590 and Shewana3_1591 are separated by 261 nucleotides Shewana3_1591 and Shewana3_1592 are separated by 235 nucleotides Shewana3_1592 and Shewana3_1593 overlap by 8 nucleotides
Shewana3_1590: Shewana3_1590 - hypothetical protein (RefSeq), at 1,867,182 to 1,867,577
_1590
Shewana3_1591: Shewana3_1591 - hypothetical protein (RefSeq), at 1,867,839 to 1,868,225
_1591
Shewana3_1592: Shewana3_1592 - hypothetical protein (RefSeq), at 1,868,461 to 1,869,525
_1592
Shewana3_1593: Shewana3_1593 - hypothetical protein (RefSeq), at 1,869,518 to 1,870,642
_1593
Position (kb)
1868
1869
1870 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1867.580 kb on - strand at 1867.580 kb on - strand at 1867.715 kb on + strand at 1867.723 kb on - strand at 1867.723 kb on - strand at 1867.744 kb on + strand at 1867.744 kb on + strand at 1867.788 kb on - strand at 1867.796 kb on - strand at 1868.067 kb on - strand, within Shewana3_1591 at 1868.426 kb on - strand at 1868.626 kb on - strand, within Shewana3_1592 at 1868.699 kb on - strand, within Shewana3_1592 at 1868.833 kb on - strand, within Shewana3_1592 at 1869.010 kb on + strand, within Shewana3_1592 at 1869.218 kb on + strand, within Shewana3_1592 at 1869.427 kb on + strand at 1869.435 kb on - strand at 1869.435 kb on - strand at 1869.437 kb on - strand at 1869.439 kb on + strand at 1869.558 kb on + strand at 1869.620 kb on - strand at 1869.673 kb on + strand, within Shewana3_1593 at 1869.785 kb on - strand, within Shewana3_1593 at 1870.106 kb on - strand, within Shewana3_1593 at 1870.224 kb on - strand, within Shewana3_1593 at 1870.379 kb on - strand, within Shewana3_1593 at 1870.389 kb on - strand, within Shewana3_1593
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,867,580 - +0.4 1,867,580 - +2.6 1,867,715 + +0.6 1,867,723 - +1.6 1,867,723 - -0.4 1,867,744 + -1.0 1,867,744 + -1.3 1,867,788 - +1.6 1,867,796 - -1.5 1,868,067 - Shewana3_1591 0.59 -2.4 1,868,426 - -1.4 1,868,626 - Shewana3_1592 0.15 -0.9 1,868,699 - Shewana3_1592 0.22 +0.2 1,868,833 - Shewana3_1592 0.35 -0.6 1,869,010 + Shewana3_1592 0.52 -0.1 1,869,218 + Shewana3_1592 0.71 -0.0 1,869,427 + -1.6 1,869,435 - +2.6 1,869,435 - -1.1 1,869,437 - -0.9 1,869,439 + +0.2 1,869,558 + +1.0 1,869,620 - -1.6 1,869,673 + Shewana3_1593 0.14 -0.1 1,869,785 - Shewana3_1593 0.24 -0.0 1,870,106 - Shewana3_1593 0.52 +0.6 1,870,224 - Shewana3_1593 0.63 +1.6 1,870,379 - Shewana3_1593 0.77 -0.0 1,870,389 - Shewana3_1593 0.77 +1.6
Or see this region's nucleotide sequence