Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1577 and Shewana3_1578 are separated by 142 nucleotides Shewana3_1578 and Shewana3_1579 are separated by 236 nucleotides Shewana3_1579 and Shewana3_1580 are separated by 578 nucleotides
Shewana3_1577: Shewana3_1577 - exonuclease, RNase T and DNA polymerase III (RefSeq), at 1,846,418 to 1,847,104
_1577
Shewana3_1578: Shewana3_1578 - MarR family transcriptional regulator (RefSeq), at 1,847,247 to 1,847,672
_1578
Shewana3_1579: Shewana3_1579 - alcohol dehydrogenase (RefSeq), at 1,847,909 to 1,848,904
_1579
Shewana3_1580: Shewana3_1580 - hypothetical protein (RefSeq), at 1,849,483 to 1,850,082
_1580
Position (kb)
1847
1848
1849 Strain fitness (log2 ratio)
-1
0
1
2 at 1846.938 kb on + strand, within Shewana3_1577 at 1846.944 kb on + strand, within Shewana3_1577 at 1846.946 kb on - strand, within Shewana3_1577 at 1847.067 kb on + strand at 1847.075 kb on - strand at 1847.479 kb on - strand, within Shewana3_1578 at 1847.554 kb on + strand, within Shewana3_1578 at 1847.605 kb on - strand, within Shewana3_1578 at 1847.644 kb on - strand at 1847.962 kb on + strand at 1848.171 kb on + strand, within Shewana3_1579 at 1848.179 kb on - strand, within Shewana3_1579 at 1848.311 kb on + strand, within Shewana3_1579 at 1848.387 kb on - strand, within Shewana3_1579 at 1848.446 kb on - strand, within Shewana3_1579 at 1848.744 kb on - strand, within Shewana3_1579 at 1848.928 kb on + strand at 1849.040 kb on + strand at 1849.048 kb on - strand at 1849.140 kb on + strand at 1849.292 kb on - strand at 1849.362 kb on + strand at 1849.690 kb on - strand, within Shewana3_1580 at 1849.763 kb on + strand, within Shewana3_1580
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,846,938 + Shewana3_1577 0.76 -0.4 1,846,944 + Shewana3_1577 0.77 -0.7 1,846,946 - Shewana3_1577 0.77 -0.1 1,847,067 + +0.2 1,847,075 - +2.5 1,847,479 - Shewana3_1578 0.54 +1.0 1,847,554 + Shewana3_1578 0.72 +1.5 1,847,605 - Shewana3_1578 0.84 +1.5 1,847,644 - +0.4 1,847,962 + -0.0 1,848,171 + Shewana3_1579 0.26 -0.8 1,848,179 - Shewana3_1579 0.27 -0.7 1,848,311 + Shewana3_1579 0.40 +0.2 1,848,387 - Shewana3_1579 0.48 +0.9 1,848,446 - Shewana3_1579 0.54 +0.2 1,848,744 - Shewana3_1579 0.84 -1.4 1,848,928 + +1.0 1,849,040 + -0.2 1,849,048 - +1.8 1,849,140 + +0.4 1,849,292 - -1.3 1,849,362 + +1.5 1,849,690 - Shewana3_1580 0.34 +0.9 1,849,763 + Shewana3_1580 0.47 +1.0
Or see this region's nucleotide sequence