Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1569 and Shewana3_1570 are separated by 225 nucleotides Shewana3_1570 and Shewana3_1571 are separated by 210 nucleotides Shewana3_1571 and Shewana3_1572 are separated by 56 nucleotides
Shewana3_1569: Shewana3_1569 - DNA ligase, NAD-dependent (RefSeq), at 1,835,787 to 1,837,862
_1569
Shewana3_1570: Shewana3_1570 - hypothetical protein (RefSeq), at 1,838,088 to 1,838,582
_1570
Shewana3_1571: Shewana3_1571 - metal dependent phosphohydrolase (RefSeq), at 1,838,793 to 1,839,998
_1571
Shewana3_1572: Shewana3_1572 - NAD-dependent epimerase/dehydratase (RefSeq), at 1,840,055 to 1,840,912
_1572
Position (kb)
1838
1839
1840 Strain fitness (log2 ratio)
-2
-1
0
1 at 1837.886 kb on + strand at 1838.254 kb on - strand, within Shewana3_1570 at 1838.291 kb on + strand, within Shewana3_1570 at 1838.311 kb on + strand, within Shewana3_1570 at 1838.489 kb on - strand, within Shewana3_1570 at 1838.639 kb on - strand at 1838.704 kb on + strand at 1838.783 kb on + strand at 1839.103 kb on + strand, within Shewana3_1571 at 1839.103 kb on + strand, within Shewana3_1571 at 1839.103 kb on + strand, within Shewana3_1571 at 1839.115 kb on + strand, within Shewana3_1571 at 1839.123 kb on + strand, within Shewana3_1571 at 1839.267 kb on + strand, within Shewana3_1571 at 1839.864 kb on + strand, within Shewana3_1571 at 1840.380 kb on + strand, within Shewana3_1572 at 1840.426 kb on + strand, within Shewana3_1572 at 1840.697 kb on + strand, within Shewana3_1572
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,837,886 + -0.3 1,838,254 - Shewana3_1570 0.34 -0.1 1,838,291 + Shewana3_1570 0.41 +0.8 1,838,311 + Shewana3_1570 0.45 -0.5 1,838,489 - Shewana3_1570 0.81 -0.6 1,838,639 - -0.1 1,838,704 + -0.1 1,838,783 + +0.9 1,839,103 + Shewana3_1571 0.26 -1.6 1,839,103 + Shewana3_1571 0.26 -1.7 1,839,103 + Shewana3_1571 0.26 -0.4 1,839,115 + Shewana3_1571 0.27 -0.2 1,839,123 + Shewana3_1571 0.27 -0.4 1,839,267 + Shewana3_1571 0.39 -1.8 1,839,864 + Shewana3_1571 0.89 +0.7 1,840,380 + Shewana3_1572 0.38 +0.7 1,840,426 + Shewana3_1572 0.43 +0.4 1,840,697 + Shewana3_1572 0.75 +0.3
Or see this region's nucleotide sequence