Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1497 and Shewana3_1498 are separated by 370 nucleotides Shewana3_1498 and Shewana3_1499 are separated by 114 nucleotides
Shewana3_1497: Shewana3_1497 - aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (RefSeq), at 1,743,628 to 1,745,874
_1497
Shewana3_1498: Shewana3_1498 - hypothetical protein (RefSeq), at 1,746,245 to 1,746,736
_1498
Shewana3_1499: Shewana3_1499 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,746,851 to 1,748,305
_1499
Position (kb)
1746
1747 Strain fitness (log2 ratio)
-2
-1
0
1 at 1745.318 kb on + strand, within Shewana3_1497 at 1745.344 kb on + strand, within Shewana3_1497 at 1745.396 kb on - strand, within Shewana3_1497 at 1745.443 kb on + strand, within Shewana3_1497 at 1745.499 kb on + strand, within Shewana3_1497 at 1745.568 kb on + strand, within Shewana3_1497 at 1745.580 kb on - strand, within Shewana3_1497 at 1746.293 kb on + strand at 1746.416 kb on - strand, within Shewana3_1498 at 1747.079 kb on - strand, within Shewana3_1499 at 1747.110 kb on + strand, within Shewana3_1499 at 1747.320 kb on + strand, within Shewana3_1499 at 1747.597 kb on + strand, within Shewana3_1499 at 1747.619 kb on + strand, within Shewana3_1499
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,745,318 + Shewana3_1497 0.75 +1.0 1,745,344 + Shewana3_1497 0.76 -0.3 1,745,396 - Shewana3_1497 0.79 -2.2 1,745,443 + Shewana3_1497 0.81 -0.5 1,745,499 + Shewana3_1497 0.83 -0.1 1,745,568 + Shewana3_1497 0.86 +0.3 1,745,580 - Shewana3_1497 0.87 +0.4 1,746,293 + -0.1 1,746,416 - Shewana3_1498 0.35 -0.7 1,747,079 - Shewana3_1499 0.16 +1.4 1,747,110 + Shewana3_1499 0.18 +0.6 1,747,320 + Shewana3_1499 0.32 -0.4 1,747,597 + Shewana3_1499 0.51 +0.8 1,747,619 + Shewana3_1499 0.53 +1.3
Or see this region's nucleotide sequence