Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1469 and Shewana3_1470 are separated by 69 nucleotides Shewana3_1470 and Shewana3_1471 are separated by 64 nucleotides
Shewana3_1469: Shewana3_1469 - chorismate synthase (RefSeq), at 1,707,823 to 1,708,917
_1469
Shewana3_1470: Shewana3_1470 - major facilitator transporter (RefSeq), at 1,708,987 to 1,710,156
_1470
Shewana3_1471: Shewana3_1471 - ATP-NAD/AcoX kinase (RefSeq), at 1,710,221 to 1,711,363
_1471
Position (kb)
1708
1709
1710
1711 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1708.184 kb on - strand, within Shewana3_1469 at 1708.286 kb on + strand, within Shewana3_1469 at 1708.572 kb on - strand, within Shewana3_1469 at 1708.741 kb on + strand, within Shewana3_1469 at 1708.792 kb on + strand, within Shewana3_1469 at 1708.825 kb on + strand at 1708.889 kb on + strand at 1708.889 kb on + strand at 1708.897 kb on - strand at 1708.897 kb on - strand at 1709.006 kb on - strand at 1709.080 kb on - strand at 1709.161 kb on - strand, within Shewana3_1470 at 1709.305 kb on - strand, within Shewana3_1470 at 1709.443 kb on + strand, within Shewana3_1470 at 1709.481 kb on - strand, within Shewana3_1470 at 1709.586 kb on + strand, within Shewana3_1470 at 1709.669 kb on + strand, within Shewana3_1470 at 1709.669 kb on + strand, within Shewana3_1470 at 1709.677 kb on - strand, within Shewana3_1470 at 1709.677 kb on - strand, within Shewana3_1470 at 1709.974 kb on + strand, within Shewana3_1470 at 1710.065 kb on + strand at 1710.092 kb on - strand at 1710.222 kb on - strand at 1710.222 kb on - strand at 1710.276 kb on + strand at 1710.342 kb on - strand, within Shewana3_1471 at 1710.510 kb on - strand, within Shewana3_1471 at 1710.648 kb on + strand, within Shewana3_1471 at 1710.675 kb on + strand, within Shewana3_1471 at 1710.690 kb on - strand, within Shewana3_1471 at 1710.781 kb on + strand, within Shewana3_1471 at 1710.785 kb on + strand, within Shewana3_1471 at 1710.833 kb on - strand, within Shewana3_1471 at 1710.979 kb on + strand, within Shewana3_1471 at 1711.004 kb on - strand, within Shewana3_1471 at 1711.068 kb on + strand, within Shewana3_1471
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,708,184 - Shewana3_1469 0.33 +0.8 1,708,286 + Shewana3_1469 0.42 -0.3 1,708,572 - Shewana3_1469 0.68 -0.2 1,708,741 + Shewana3_1469 0.84 +1.4 1,708,792 + Shewana3_1469 0.88 +1.3 1,708,825 + +1.3 1,708,889 + -0.1 1,708,889 + +0.1 1,708,897 - +1.4 1,708,897 - -0.8 1,709,006 - -1.4 1,709,080 - -0.4 1,709,161 - Shewana3_1470 0.15 -0.6 1,709,305 - Shewana3_1470 0.27 -0.6 1,709,443 + Shewana3_1470 0.39 -0.2 1,709,481 - Shewana3_1470 0.42 -0.4 1,709,586 + Shewana3_1470 0.51 -0.5 1,709,669 + Shewana3_1470 0.58 +0.0 1,709,669 + Shewana3_1470 0.58 +0.9 1,709,677 - Shewana3_1470 0.59 -0.6 1,709,677 - Shewana3_1470 0.59 -0.2 1,709,974 + Shewana3_1470 0.84 -0.7 1,710,065 + +0.4 1,710,092 - -0.4 1,710,222 - +1.4 1,710,222 - +0.4 1,710,276 + +0.6 1,710,342 - Shewana3_1471 0.11 -0.2 1,710,510 - Shewana3_1471 0.25 -0.0 1,710,648 + Shewana3_1471 0.37 -0.2 1,710,675 + Shewana3_1471 0.40 -0.4 1,710,690 - Shewana3_1471 0.41 -2.8 1,710,781 + Shewana3_1471 0.49 -0.9 1,710,785 + Shewana3_1471 0.49 +0.7 1,710,833 - Shewana3_1471 0.54 -0.6 1,710,979 + Shewana3_1471 0.66 -0.1 1,711,004 - Shewana3_1471 0.69 -2.5 1,711,068 + Shewana3_1471 0.74 +0.3
Or see this region's nucleotide sequence