Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1455 and Shewana3_1456 overlap by 1 nucleotides Shewana3_1456 and Shewana3_1457 overlap by 7 nucleotides Shewana3_1457 and Shewana3_1458 are separated by 63 nucleotides
Shewana3_1455: Shewana3_1455 - TPR repeat-containing protein (RefSeq), at 1,687,207 to 1,689,279
_1455
Shewana3_1456: Shewana3_1456 - von Willebrand factor, type A (RefSeq), at 1,689,279 to 1,690,295
_1456
Shewana3_1457: Shewana3_1457 - hypothetical protein (RefSeq), at 1,690,289 to 1,690,882
_1457
Shewana3_1458: Shewana3_1458 - hypothetical protein (RefSeq), at 1,690,946 to 1,691,914
_1458
Position (kb)
1689
1690
1691 Strain fitness (log2 ratio)
-2
-1
0
1 at 1688.319 kb on + strand, within Shewana3_1455 at 1688.319 kb on + strand, within Shewana3_1455 at 1688.342 kb on - strand, within Shewana3_1455 at 1688.350 kb on + strand, within Shewana3_1455 at 1688.358 kb on - strand, within Shewana3_1455 at 1688.909 kb on - strand, within Shewana3_1455 at 1689.070 kb on - strand, within Shewana3_1455 at 1689.299 kb on + strand at 1689.375 kb on - strand at 1689.377 kb on + strand at 1689.629 kb on + strand, within Shewana3_1456 at 1689.730 kb on + strand, within Shewana3_1456 at 1689.738 kb on - strand, within Shewana3_1456 at 1689.954 kb on + strand, within Shewana3_1456 at 1689.957 kb on - strand, within Shewana3_1456 at 1690.189 kb on - strand, within Shewana3_1456 at 1690.218 kb on - strand at 1690.377 kb on - strand, within Shewana3_1457 at 1690.441 kb on + strand, within Shewana3_1457 at 1690.741 kb on - strand, within Shewana3_1457 at 1690.753 kb on - strand, within Shewana3_1457 at 1690.764 kb on + strand, within Shewana3_1457 at 1690.772 kb on - strand, within Shewana3_1457 at 1690.782 kb on + strand, within Shewana3_1457 at 1690.893 kb on + strand at 1690.923 kb on - strand at 1690.976 kb on + strand at 1690.976 kb on + strand at 1690.984 kb on - strand at 1691.059 kb on + strand, within Shewana3_1458 at 1691.180 kb on - strand, within Shewana3_1458
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,688,319 + Shewana3_1455 0.54 +0.3 1,688,319 + Shewana3_1455 0.54 +0.6 1,688,342 - Shewana3_1455 0.55 -0.5 1,688,350 + Shewana3_1455 0.55 -0.8 1,688,358 - Shewana3_1455 0.56 -0.5 1,688,909 - Shewana3_1455 0.82 +0.4 1,689,070 - Shewana3_1455 0.90 -1.6 1,689,299 + -0.0 1,689,375 - +0.0 1,689,377 + -1.5 1,689,629 + Shewana3_1456 0.34 +0.7 1,689,730 + Shewana3_1456 0.44 -1.0 1,689,738 - Shewana3_1456 0.45 -1.0 1,689,954 + Shewana3_1456 0.66 -1.1 1,689,957 - Shewana3_1456 0.67 -0.6 1,690,189 - Shewana3_1456 0.89 -0.9 1,690,218 - +0.2 1,690,377 - Shewana3_1457 0.15 -2.2 1,690,441 + Shewana3_1457 0.26 -1.0 1,690,741 - Shewana3_1457 0.76 -0.2 1,690,753 - Shewana3_1457 0.78 -1.7 1,690,764 + Shewana3_1457 0.80 +1.3 1,690,772 - Shewana3_1457 0.81 +0.3 1,690,782 + Shewana3_1457 0.83 +0.2 1,690,893 + +0.1 1,690,923 - +1.3 1,690,976 + +0.0 1,690,976 + -0.2 1,690,984 - -2.6 1,691,059 + Shewana3_1458 0.12 -1.5 1,691,180 - Shewana3_1458 0.24 -0.5
Or see this region's nucleotide sequence