Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1450 and Shewana3_1451 are separated by 340 nucleotides Shewana3_1451 and Shewana3_1452 are separated by 158 nucleotides Shewana3_1452 and Shewana3_1453 overlap by 8 nucleotides
Shewana3_1450: Shewana3_1450 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 1,680,961 to 1,682,247
_1450
Shewana3_1451: Shewana3_1451 - sodium/proline symporter (RefSeq), at 1,682,588 to 1,684,039
_1451
Shewana3_1452: Shewana3_1452 - hypothetical protein (RefSeq), at 1,684,198 to 1,684,902
_1452
Shewana3_1453: Shewana3_1453 - RNA polymerase sigma factor (RefSeq), at 1,684,895 to 1,685,458
_1453
Position (kb)
1682
1683
1684
1685 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1681.941 kb on + strand, within Shewana3_1450 at 1682.045 kb on - strand, within Shewana3_1450 at 1682.045 kb on - strand, within Shewana3_1450 at 1682.097 kb on - strand, within Shewana3_1450 at 1682.140 kb on + strand at 1682.140 kb on + strand at 1682.148 kb on - strand at 1682.557 kb on + strand at 1682.821 kb on + strand, within Shewana3_1451 at 1682.828 kb on + strand, within Shewana3_1451 at 1682.836 kb on - strand, within Shewana3_1451 at 1682.840 kb on + strand, within Shewana3_1451 at 1682.870 kb on + strand, within Shewana3_1451 at 1682.878 kb on - strand, within Shewana3_1451 at 1682.878 kb on - strand, within Shewana3_1451 at 1682.970 kb on + strand, within Shewana3_1451 at 1683.013 kb on + strand, within Shewana3_1451 at 1683.045 kb on - strand, within Shewana3_1451 at 1683.437 kb on - strand, within Shewana3_1451 at 1683.548 kb on - strand, within Shewana3_1451 at 1683.548 kb on - strand, within Shewana3_1451 at 1683.712 kb on + strand, within Shewana3_1451 at 1684.270 kb on - strand, within Shewana3_1452 at 1684.335 kb on - strand, within Shewana3_1452 at 1684.660 kb on - strand, within Shewana3_1452 at 1684.686 kb on + strand, within Shewana3_1452 at 1684.760 kb on - strand, within Shewana3_1452 at 1684.996 kb on - strand, within Shewana3_1453
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,681,941 + Shewana3_1450 0.76 -1.3 1,682,045 - Shewana3_1450 0.84 +1.0 1,682,045 - Shewana3_1450 0.84 +2.2 1,682,097 - Shewana3_1450 0.88 +1.7 1,682,140 + -2.3 1,682,140 + +0.4 1,682,148 - +2.2 1,682,557 + -0.2 1,682,821 + Shewana3_1451 0.16 -0.6 1,682,828 + Shewana3_1451 0.17 -1.0 1,682,836 - Shewana3_1451 0.17 +1.7 1,682,840 + Shewana3_1451 0.17 +0.4 1,682,870 + Shewana3_1451 0.19 +0.4 1,682,878 - Shewana3_1451 0.20 +2.2 1,682,878 - Shewana3_1451 0.20 +0.1 1,682,970 + Shewana3_1451 0.26 -0.8 1,683,013 + Shewana3_1451 0.29 +2.4 1,683,045 - Shewana3_1451 0.31 +0.5 1,683,437 - Shewana3_1451 0.58 +0.4 1,683,548 - Shewana3_1451 0.66 -0.1 1,683,548 - Shewana3_1451 0.66 +0.8 1,683,712 + Shewana3_1451 0.77 +0.9 1,684,270 - Shewana3_1452 0.10 +0.9 1,684,335 - Shewana3_1452 0.19 +1.8 1,684,660 - Shewana3_1452 0.66 +1.9 1,684,686 + Shewana3_1452 0.69 +0.4 1,684,760 - Shewana3_1452 0.80 +0.8 1,684,996 - Shewana3_1453 0.18 +0.6
Or see this region's nucleotide sequence