Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1446 and Shewana3_1447 are separated by 34 nucleotides Shewana3_1447 and Shewana3_1448 are separated by 182 nucleotides
Shewana3_1446: Shewana3_1446 - acriflavin resistance protein (RefSeq), at 1,675,139 to 1,678,369
_1446
Shewana3_1447: Shewana3_1447 - RND family efflux transporter MFP subunit (RefSeq), at 1,678,404 to 1,679,417
_1447
Shewana3_1448: Shewana3_1448 - hypothetical protein (RefSeq), at 1,679,600 to 1,680,352
_1448
Position (kb)
1678
1679
1680 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1677.495 kb on - strand, within Shewana3_1446 at 1677.566 kb on - strand, within Shewana3_1446 at 1677.708 kb on + strand, within Shewana3_1446 at 1677.730 kb on + strand, within Shewana3_1446 at 1677.738 kb on - strand, within Shewana3_1446 at 1677.857 kb on + strand, within Shewana3_1446 at 1677.865 kb on - strand, within Shewana3_1446 at 1677.865 kb on - strand, within Shewana3_1446 at 1677.870 kb on + strand, within Shewana3_1446 at 1677.960 kb on + strand, within Shewana3_1446 at 1677.960 kb on + strand, within Shewana3_1446 at 1678.096 kb on + strand at 1678.309 kb on - strand at 1678.507 kb on - strand, within Shewana3_1447 at 1678.520 kb on - strand, within Shewana3_1447 at 1678.555 kb on - strand, within Shewana3_1447 at 1678.696 kb on - strand, within Shewana3_1447 at 1678.727 kb on - strand, within Shewana3_1447 at 1678.799 kb on + strand, within Shewana3_1447 at 1679.153 kb on + strand, within Shewana3_1447 at 1679.161 kb on - strand, within Shewana3_1447 at 1679.173 kb on - strand, within Shewana3_1447 at 1679.243 kb on + strand, within Shewana3_1447 at 1679.302 kb on - strand, within Shewana3_1447 at 1679.987 kb on - strand, within Shewana3_1448 at 1679.992 kb on - strand, within Shewana3_1448 at 1679.993 kb on - strand, within Shewana3_1448 at 1680.083 kb on + strand, within Shewana3_1448 at 1680.101 kb on - strand, within Shewana3_1448 at 1680.112 kb on + strand, within Shewana3_1448 at 1680.190 kb on - strand, within Shewana3_1448 at 1680.211 kb on - strand, within Shewana3_1448 at 1680.232 kb on + strand, within Shewana3_1448 at 1680.252 kb on - strand, within Shewana3_1448 at 1680.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,677,495 - Shewana3_1446 0.73 -2.3 1,677,566 - Shewana3_1446 0.75 -0.7 1,677,708 + Shewana3_1446 0.80 -1.3 1,677,730 + Shewana3_1446 0.80 -1.9 1,677,738 - Shewana3_1446 0.80 -0.8 1,677,857 + Shewana3_1446 0.84 -0.5 1,677,865 - Shewana3_1446 0.84 -0.3 1,677,865 - Shewana3_1446 0.84 +1.3 1,677,870 + Shewana3_1446 0.85 +1.0 1,677,960 + Shewana3_1446 0.87 -0.5 1,677,960 + Shewana3_1446 0.87 -1.7 1,678,096 + +2.9 1,678,309 - -0.5 1,678,507 - Shewana3_1447 0.10 +0.6 1,678,520 - Shewana3_1447 0.11 +0.5 1,678,555 - Shewana3_1447 0.15 -0.5 1,678,696 - Shewana3_1447 0.29 -2.2 1,678,727 - Shewana3_1447 0.32 -2.3 1,678,799 + Shewana3_1447 0.39 +0.3 1,679,153 + Shewana3_1447 0.74 -2.9 1,679,161 - Shewana3_1447 0.75 -1.0 1,679,173 - Shewana3_1447 0.76 -2.4 1,679,243 + Shewana3_1447 0.83 +0.3 1,679,302 - Shewana3_1447 0.89 -0.5 1,679,987 - Shewana3_1448 0.51 +2.4 1,679,992 - Shewana3_1448 0.52 +0.8 1,679,993 - Shewana3_1448 0.52 +0.2 1,680,083 + Shewana3_1448 0.64 +0.5 1,680,101 - Shewana3_1448 0.67 -0.8 1,680,112 + Shewana3_1448 0.68 +1.6 1,680,190 - Shewana3_1448 0.78 -1.2 1,680,211 - Shewana3_1448 0.81 +0.8 1,680,232 + Shewana3_1448 0.84 -0.2 1,680,252 - Shewana3_1448 0.87 +0.0 1,680,394 - -1.1
Or see this region's nucleotide sequence