Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1428 and Shewana3_1429 are separated by 336 nucleotides Shewana3_1429 and Shewana3_1430 are separated by 111 nucleotides Shewana3_1430 and Shewana3_1431 are separated by 113 nucleotides Shewana3_1431 and Shewana3_1432 are separated by 145 nucleotides
Shewana3_1428: Shewana3_1428 - oxidoreductase domain-containing protein (RefSeq), at 1,658,274 to 1,659,653
_1428
Shewana3_1429: Shewana3_1429 - hypothetical protein (RefSeq), at 1,659,990 to 1,660,424
_1429
Shewana3_1430: Shewana3_1430 - pseudouridine synthase (RefSeq), at 1,660,536 to 1,661,207
_1430
Shewana3_1431: Shewana3_1431 - redoxin domain-containing protein (RefSeq), at 1,661,321 to 1,661,875
_1431
Shewana3_1432: Shewana3_1432 - hypothetical protein (RefSeq), at 1,662,021 to 1,662,647
_1432
Position (kb)
1660
1661
1662 Strain fitness (log2 ratio)
-2
-1
0
1 at 1659.550 kb on - strand at 1659.586 kb on + strand at 1659.994 kb on + strand at 1660.256 kb on + strand, within Shewana3_1429 at 1660.481 kb on - strand at 1660.548 kb on - strand at 1660.556 kb on - strand at 1660.670 kb on - strand, within Shewana3_1430 at 1660.782 kb on + strand, within Shewana3_1430 at 1660.917 kb on + strand, within Shewana3_1430 at 1660.950 kb on - strand, within Shewana3_1430 at 1660.955 kb on - strand, within Shewana3_1430 at 1661.327 kb on - strand at 1661.327 kb on - strand at 1661.448 kb on + strand, within Shewana3_1431 at 1661.518 kb on - strand, within Shewana3_1431 at 1661.855 kb on - strand at 1661.927 kb on + strand at 1661.941 kb on - strand at 1661.944 kb on + strand at 1662.034 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,659,550 - -0.0 1,659,586 + -0.6 1,659,994 + -0.1 1,660,256 + Shewana3_1429 0.61 -1.4 1,660,481 - +1.3 1,660,548 - +0.9 1,660,556 - -0.8 1,660,670 - Shewana3_1430 0.20 +1.6 1,660,782 + Shewana3_1430 0.37 -2.2 1,660,917 + Shewana3_1430 0.57 -0.5 1,660,950 - Shewana3_1430 0.62 -1.5 1,660,955 - Shewana3_1430 0.62 -2.1 1,661,327 - -1.8 1,661,327 - -0.5 1,661,448 + Shewana3_1431 0.23 -2.1 1,661,518 - Shewana3_1431 0.35 -0.3 1,661,855 - -0.3 1,661,927 + -0.6 1,661,941 - -0.4 1,661,944 + -1.0 1,662,034 + -0.3
Or see this region's nucleotide sequence