Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1425 and Shewana3_1426 are separated by 172 nucleotides Shewana3_1426 and Shewana3_1427 are separated by 76 nucleotides Shewana3_1427 and Shewana3_1428 are separated by 52 nucleotides
Shewana3_1425: Shewana3_1425 - response regulator receiver modulated CheW protein (RefSeq), at 1,655,322 to 1,656,221
_1425
Shewana3_1426: Shewana3_1426 - serine/threonine transporter SstT (RefSeq), at 1,656,394 to 1,657,620
_1426
Shewana3_1427: Shewana3_1427 - hypothetical protein (RefSeq), at 1,657,697 to 1,658,221
_1427
Shewana3_1428: Shewana3_1428 - oxidoreductase domain-containing protein (RefSeq), at 1,658,274 to 1,659,653
_1428
Position (kb)
1656
1657
1658 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1655.420 kb on + strand, within Shewana3_1425 at 1655.428 kb on - strand, within Shewana3_1425 at 1655.542 kb on + strand, within Shewana3_1425 at 1655.550 kb on - strand, within Shewana3_1425 at 1656.279 kb on + strand at 1656.344 kb on + strand at 1656.565 kb on + strand, within Shewana3_1426 at 1656.673 kb on + strand, within Shewana3_1426 at 1656.688 kb on + strand, within Shewana3_1426 at 1656.731 kb on + strand, within Shewana3_1426 at 1656.746 kb on + strand, within Shewana3_1426 at 1656.866 kb on + strand, within Shewana3_1426 at 1656.871 kb on + strand, within Shewana3_1426 at 1656.871 kb on + strand, within Shewana3_1426 at 1657.046 kb on - strand, within Shewana3_1426 at 1657.048 kb on + strand, within Shewana3_1426 at 1657.157 kb on - strand, within Shewana3_1426 at 1657.312 kb on + strand, within Shewana3_1426 at 1657.312 kb on + strand, within Shewana3_1426 at 1657.451 kb on + strand, within Shewana3_1426 at 1657.512 kb on - strand at 1657.556 kb on - strand at 1657.737 kb on - strand at 1657.807 kb on - strand, within Shewana3_1427 at 1657.807 kb on - strand, within Shewana3_1427 at 1657.953 kb on + strand, within Shewana3_1427 at 1657.953 kb on + strand, within Shewana3_1427 at 1658.051 kb on - strand, within Shewana3_1427 at 1658.051 kb on - strand, within Shewana3_1427 at 1658.143 kb on + strand, within Shewana3_1427 at 1658.156 kb on - strand, within Shewana3_1427 at 1658.224 kb on + strand at 1658.335 kb on - strand at 1658.363 kb on + strand at 1658.566 kb on + strand, within Shewana3_1428 at 1658.581 kb on + strand, within Shewana3_1428
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,655,420 + Shewana3_1425 0.11 -1.1 1,655,428 - Shewana3_1425 0.12 +0.7 1,655,542 + Shewana3_1425 0.24 +0.7 1,655,550 - Shewana3_1425 0.25 +0.7 1,656,279 + -2.3 1,656,344 + -1.2 1,656,565 + Shewana3_1426 0.14 +1.3 1,656,673 + Shewana3_1426 0.23 -0.7 1,656,688 + Shewana3_1426 0.24 +0.4 1,656,731 + Shewana3_1426 0.27 -0.4 1,656,746 + Shewana3_1426 0.29 +0.1 1,656,866 + Shewana3_1426 0.38 -1.5 1,656,871 + Shewana3_1426 0.39 -0.0 1,656,871 + Shewana3_1426 0.39 +1.7 1,657,046 - Shewana3_1426 0.53 -1.3 1,657,048 + Shewana3_1426 0.53 +0.9 1,657,157 - Shewana3_1426 0.62 -2.2 1,657,312 + Shewana3_1426 0.75 +1.1 1,657,312 + Shewana3_1426 0.75 +1.9 1,657,451 + Shewana3_1426 0.86 +0.9 1,657,512 - -0.0 1,657,556 - -0.3 1,657,737 - -1.9 1,657,807 - Shewana3_1427 0.21 -1.3 1,657,807 - Shewana3_1427 0.21 -1.1 1,657,953 + Shewana3_1427 0.49 +1.3 1,657,953 + Shewana3_1427 0.49 -0.0 1,658,051 - Shewana3_1427 0.67 -1.7 1,658,051 - Shewana3_1427 0.67 +0.7 1,658,143 + Shewana3_1427 0.85 -0.0 1,658,156 - Shewana3_1427 0.87 +0.3 1,658,224 + +1.3 1,658,335 - -0.4 1,658,363 + +1.3 1,658,566 + Shewana3_1428 0.21 -1.2 1,658,581 + Shewana3_1428 0.22 -1.8
Or see this region's nucleotide sequence