Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1388 and Shewana3_1389 are separated by 95 nucleotides Shewana3_1389 and Shewana3_1390 are separated by 310 nucleotides Shewana3_1390 and Shewana3_1391 are separated by 72 nucleotides
Shewana3_1388: Shewana3_1388 - hypothetical protein (RefSeq), at 1,603,063 to 1,603,824
_1388
Shewana3_1389: Shewana3_1389 - lipoprotein (RefSeq), at 1,603,920 to 1,604,426
_1389
Shewana3_1390: Shewana3_1390 - GAF sensor signal transduction histidine kinase (RefSeq), at 1,604,737 to 1,606,098
_1390
Shewana3_1391: Shewana3_1391 - glucose-1-phosphate thymidylyltransferase (RefSeq), at 1,606,171 to 1,607,109
_1391
Shewana3_1392: Shewana3_1392 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 1,607,096 to 1,607,632
_1392
Position (kb)
1604
1605
1606
1607 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1603.866 kb on - strand at 1604.197 kb on - strand, within Shewana3_1389 at 1604.302 kb on + strand, within Shewana3_1389 at 1604.337 kb on + strand, within Shewana3_1389 at 1604.569 kb on + strand at 1604.589 kb on - strand at 1604.617 kb on + strand at 1604.617 kb on - strand at 1604.813 kb on + strand at 1604.821 kb on - strand at 1604.906 kb on + strand, within Shewana3_1390 at 1604.914 kb on - strand, within Shewana3_1390 at 1604.914 kb on - strand, within Shewana3_1390 at 1605.095 kb on + strand, within Shewana3_1390 at 1605.282 kb on + strand, within Shewana3_1390 at 1605.340 kb on + strand, within Shewana3_1390 at 1605.421 kb on + strand, within Shewana3_1390 at 1605.451 kb on - strand, within Shewana3_1390 at 1605.556 kb on - strand, within Shewana3_1390 at 1605.691 kb on - strand, within Shewana3_1390 at 1605.891 kb on + strand, within Shewana3_1390 at 1605.913 kb on - strand, within Shewana3_1390 at 1605.982 kb on + strand at 1606.466 kb on + strand, within Shewana3_1391 at 1606.615 kb on + strand, within Shewana3_1391 at 1606.765 kb on - strand, within Shewana3_1391 at 1606.970 kb on + strand, within Shewana3_1391 at 1606.970 kb on + strand, within Shewana3_1391
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,603,866 - +0.2 1,604,197 - Shewana3_1389 0.55 -2.1 1,604,302 + Shewana3_1389 0.75 -1.5 1,604,337 + Shewana3_1389 0.82 -1.0 1,604,569 + +0.2 1,604,589 - -0.6 1,604,617 + -0.5 1,604,617 - -0.5 1,604,813 + -0.8 1,604,821 - -0.1 1,604,906 + Shewana3_1390 0.12 +1.2 1,604,914 - Shewana3_1390 0.13 +2.2 1,604,914 - Shewana3_1390 0.13 +1.2 1,605,095 + Shewana3_1390 0.26 -0.8 1,605,282 + Shewana3_1390 0.40 -0.6 1,605,340 + Shewana3_1390 0.44 -1.9 1,605,421 + Shewana3_1390 0.50 -1.4 1,605,451 - Shewana3_1390 0.52 -1.8 1,605,556 - Shewana3_1390 0.60 +0.6 1,605,691 - Shewana3_1390 0.70 +2.2 1,605,891 + Shewana3_1390 0.85 -1.3 1,605,913 - Shewana3_1390 0.86 +1.2 1,605,982 + -1.4 1,606,466 + Shewana3_1391 0.31 +0.6 1,606,615 + Shewana3_1391 0.47 -0.4 1,606,765 - Shewana3_1391 0.63 +0.2 1,606,970 + Shewana3_1391 0.85 -1.1 1,606,970 + Shewana3_1391 0.85 -3.0
Or see this region's nucleotide sequence