Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1295 and Shewana3_1296 are separated by 2 nucleotides Shewana3_1296 and Shewana3_1297 are separated by 137 nucleotides Shewana3_1297 and Shewana3_1298 are separated by 113 nucleotides
Shewana3_1295: Shewana3_1295 - acriflavin resistance protein (RefSeq), at 1,506,628 to 1,509,708
_1295
Shewana3_1296: Shewana3_1296 - RND family efflux transporter MFP subunit (RefSeq), at 1,509,711 to 1,510,832
_1296
Shewana3_1297: Shewana3_1297 - TetR family transcriptional regulator (RefSeq), at 1,510,970 to 1,511,590
_1297
Shewana3_1298: Shewana3_1298 - hypothetical protein (RefSeq), at 1,511,704 to 1,512,651
_1298
Position (kb)
1509
1510
1511 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1509.132 kb on + strand, within Shewana3_1295 at 1509.236 kb on + strand, within Shewana3_1295 at 1509.285 kb on - strand, within Shewana3_1295 at 1509.381 kb on - strand, within Shewana3_1295 at 1509.408 kb on - strand at 1509.466 kb on - strand at 1509.561 kb on + strand at 1509.567 kb on + strand at 1509.659 kb on - strand at 1509.667 kb on - strand at 1509.773 kb on - strand at 1509.774 kb on + strand at 1509.819 kb on + strand at 1509.829 kb on + strand, within Shewana3_1296 at 1509.837 kb on - strand, within Shewana3_1296 at 1509.981 kb on + strand, within Shewana3_1296 at 1510.185 kb on + strand, within Shewana3_1296 at 1510.218 kb on + strand, within Shewana3_1296 at 1510.226 kb on - strand, within Shewana3_1296 at 1510.226 kb on - strand, within Shewana3_1296 at 1510.254 kb on - strand, within Shewana3_1296 at 1510.576 kb on - strand, within Shewana3_1296 at 1510.647 kb on + strand, within Shewana3_1296 at 1510.665 kb on - strand, within Shewana3_1296 at 1510.742 kb on - strand at 1510.899 kb on + strand at 1510.899 kb on + strand at 1510.899 kb on + strand at 1510.918 kb on + strand at 1510.918 kb on + strand at 1510.921 kb on - strand at 1510.966 kb on + strand at 1510.973 kb on + strand at 1511.129 kb on + strand, within Shewana3_1297 at 1511.214 kb on + strand, within Shewana3_1297 at 1511.304 kb on - strand, within Shewana3_1297 at 1511.366 kb on + strand, within Shewana3_1297 at 1511.463 kb on + strand, within Shewana3_1297 at 1511.569 kb on + strand at 1511.601 kb on - strand at 1511.603 kb on + strand at 1511.696 kb on + strand at 1511.808 kb on + strand, within Shewana3_1298
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,509,132 + Shewana3_1295 0.81 -0.1 1,509,236 + Shewana3_1295 0.85 -1.4 1,509,285 - Shewana3_1295 0.86 +0.0 1,509,381 - Shewana3_1295 0.89 +0.0 1,509,408 - -3.0 1,509,466 - -2.1 1,509,561 + +0.3 1,509,567 + -0.1 1,509,659 - -0.4 1,509,667 - +0.3 1,509,773 - -0.5 1,509,774 + -0.1 1,509,819 + -0.4 1,509,829 + Shewana3_1296 0.11 -1.5 1,509,837 - Shewana3_1296 0.11 -0.6 1,509,981 + Shewana3_1296 0.24 -0.5 1,510,185 + Shewana3_1296 0.42 +0.0 1,510,218 + Shewana3_1296 0.45 +0.4 1,510,226 - Shewana3_1296 0.46 -1.4 1,510,226 - Shewana3_1296 0.46 +0.6 1,510,254 - Shewana3_1296 0.48 +1.0 1,510,576 - Shewana3_1296 0.77 -1.1 1,510,647 + Shewana3_1296 0.83 -2.1 1,510,665 - Shewana3_1296 0.85 -0.5 1,510,742 - -0.8 1,510,899 + -1.8 1,510,899 + -1.4 1,510,899 + -1.2 1,510,918 + -2.0 1,510,918 + -1.1 1,510,921 - -0.8 1,510,966 + +0.3 1,510,973 + +0.2 1,511,129 + Shewana3_1297 0.26 +1.3 1,511,214 + Shewana3_1297 0.39 +0.3 1,511,304 - Shewana3_1297 0.54 -0.5 1,511,366 + Shewana3_1297 0.64 +1.1 1,511,463 + Shewana3_1297 0.79 -0.3 1,511,569 + +0.5 1,511,601 - -2.1 1,511,603 + +1.2 1,511,696 + +0.4 1,511,808 + Shewana3_1298 0.11 +0.6
Or see this region's nucleotide sequence