Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1289 and Shewana3_1290 overlap by 4 nucleotides Shewana3_1290 and Shewana3_1291 are separated by 2 nucleotides Shewana3_1291 and Shewana3_1292 overlap by 4 nucleotides Shewana3_1292 and Shewana3_1293 are separated by 735 nucleotides
Shewana3_1289: Shewana3_1289 - conjugal transfer protein TrbF (RefSeq), at 1,500,181 to 1,500,885
_1289
Shewana3_1290: Shewana3_1290 - conjugal transfer protein TrbG/VirB9/CagX (RefSeq), at 1,500,882 to 1,501,874
_1290
Shewana3_1291: Shewana3_1291 - conjugation TrbI family protein (RefSeq), at 1,501,877 to 1,503,157
_1291
Shewana3_1292: Shewana3_1292 - hypothetical protein (RefSeq), at 1,503,154 to 1,503,399
_1292
Shewana3_1293: Shewana3_1293 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,504,135 to 1,506,138
_1293
Position (kb)
1501
1502
1503
1504 Strain fitness (log2 ratio)
-1
0
1
2 at 1501.022 kb on + strand, within Shewana3_1290 at 1501.075 kb on - strand, within Shewana3_1290 at 1501.075 kb on - strand, within Shewana3_1290 at 1501.173 kb on + strand, within Shewana3_1290 at 1501.202 kb on - strand, within Shewana3_1290 at 1501.240 kb on - strand, within Shewana3_1290 at 1501.374 kb on - strand, within Shewana3_1290 at 1501.379 kb on - strand, within Shewana3_1290 at 1501.556 kb on + strand, within Shewana3_1290 at 1501.681 kb on + strand, within Shewana3_1290 at 1501.764 kb on + strand, within Shewana3_1290 at 1502.307 kb on - strand, within Shewana3_1291 at 1502.368 kb on + strand, within Shewana3_1291 at 1502.376 kb on - strand, within Shewana3_1291 at 1502.376 kb on - strand, within Shewana3_1291 at 1502.610 kb on - strand, within Shewana3_1291 at 1503.161 kb on + strand at 1503.197 kb on - strand, within Shewana3_1292 at 1503.284 kb on - strand, within Shewana3_1292 at 1503.284 kb on - strand, within Shewana3_1292 at 1503.361 kb on + strand, within Shewana3_1292 at 1503.693 kb on + strand at 1503.694 kb on + strand at 1503.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,501,022 + Shewana3_1290 0.14 +1.1 1,501,075 - Shewana3_1290 0.19 +0.8 1,501,075 - Shewana3_1290 0.19 +0.2 1,501,173 + Shewana3_1290 0.29 +1.0 1,501,202 - Shewana3_1290 0.32 -0.5 1,501,240 - Shewana3_1290 0.36 +1.3 1,501,374 - Shewana3_1290 0.50 -0.4 1,501,379 - Shewana3_1290 0.50 +0.7 1,501,556 + Shewana3_1290 0.68 +1.9 1,501,681 + Shewana3_1290 0.80 +1.1 1,501,764 + Shewana3_1290 0.89 +0.6 1,502,307 - Shewana3_1291 0.34 +1.0 1,502,368 + Shewana3_1291 0.38 +0.4 1,502,376 - Shewana3_1291 0.39 +0.0 1,502,376 - Shewana3_1291 0.39 +0.3 1,502,610 - Shewana3_1291 0.57 +0.9 1,503,161 + -1.1 1,503,197 - Shewana3_1292 0.17 +0.1 1,503,284 - Shewana3_1292 0.53 -0.0 1,503,284 - Shewana3_1292 0.53 -0.0 1,503,361 + Shewana3_1292 0.84 +0.9 1,503,693 + -0.6 1,503,694 + -0.8 1,503,928 - +0.4
Or see this region's nucleotide sequence