Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1290

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1288 and Shewana3_1289 are separated by 18 nucleotidesShewana3_1289 and Shewana3_1290 overlap by 4 nucleotidesShewana3_1290 and Shewana3_1291 are separated by 2 nucleotides Shewana3_1288: Shewana3_1288 - conjugal transfer protein TrbL (RefSeq), at 1,498,780 to 1,500,162 _1288 Shewana3_1289: Shewana3_1289 - conjugal transfer protein TrbF (RefSeq), at 1,500,181 to 1,500,885 _1289 Shewana3_1290: Shewana3_1290 - conjugal transfer protein TrbG/VirB9/CagX (RefSeq), at 1,500,882 to 1,501,874 _1290 Shewana3_1291: Shewana3_1291 - conjugation TrbI family protein (RefSeq), at 1,501,877 to 1,503,157 _1291 Position (kb) 1500 1501 1502Strain fitness (log2 ratio) -1 0 1 2at 1499.899 kb on + strand, within Shewana3_1288at 1499.907 kb on - strand, within Shewana3_1288at 1500.028 kb on - strandat 1500.092 kb on + strandat 1500.130 kb on - strandat 1500.217 kb on - strandat 1500.291 kb on + strand, within Shewana3_1289at 1500.313 kb on + strand, within Shewana3_1289at 1500.313 kb on + strand, within Shewana3_1289at 1500.313 kb on + strand, within Shewana3_1289at 1500.347 kb on + strand, within Shewana3_1289at 1500.347 kb on - strand, within Shewana3_1289at 1500.347 kb on - strand, within Shewana3_1289at 1500.401 kb on + strand, within Shewana3_1289at 1500.420 kb on + strand, within Shewana3_1289at 1500.697 kb on - strand, within Shewana3_1289at 1500.717 kb on - strand, within Shewana3_1289at 1501.022 kb on + strand, within Shewana3_1290at 1501.075 kb on - strand, within Shewana3_1290at 1501.075 kb on - strand, within Shewana3_1290at 1501.173 kb on + strand, within Shewana3_1290at 1501.202 kb on - strand, within Shewana3_1290at 1501.240 kb on - strand, within Shewana3_1290at 1501.374 kb on - strand, within Shewana3_1290at 1501.379 kb on - strand, within Shewana3_1290at 1501.556 kb on + strand, within Shewana3_1290at 1501.681 kb on + strand, within Shewana3_1290at 1501.764 kb on + strand, within Shewana3_1290at 1502.307 kb on - strand, within Shewana3_1291at 1502.368 kb on + strand, within Shewana3_1291at 1502.376 kb on - strand, within Shewana3_1291at 1502.376 kb on - strand, within Shewana3_1291at 1502.610 kb on - strand, within Shewana3_1291

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,499,899 + Shewana3_1288 0.81 +0.8
1,499,907 - Shewana3_1288 0.81 +1.3
1,500,028 - +0.9
1,500,092 + -0.7
1,500,130 - +0.2
1,500,217 - +0.0
1,500,291 + Shewana3_1289 0.16 +0.3
1,500,313 + Shewana3_1289 0.19 +0.5
1,500,313 + Shewana3_1289 0.19 +0.8
1,500,313 + Shewana3_1289 0.19 -0.3
1,500,347 + Shewana3_1289 0.24 -0.2
1,500,347 - Shewana3_1289 0.24 +0.4
1,500,347 - Shewana3_1289 0.24 +0.8
1,500,401 + Shewana3_1289 0.31 +0.2
1,500,420 + Shewana3_1289 0.34 +0.2
1,500,697 - Shewana3_1289 0.73 -0.3
1,500,717 - Shewana3_1289 0.76 +1.5
1,501,022 + Shewana3_1290 0.14 +1.1
1,501,075 - Shewana3_1290 0.19 +0.8
1,501,075 - Shewana3_1290 0.19 +0.2
1,501,173 + Shewana3_1290 0.29 +1.0
1,501,202 - Shewana3_1290 0.32 -0.5
1,501,240 - Shewana3_1290 0.36 +1.3
1,501,374 - Shewana3_1290 0.50 -0.4
1,501,379 - Shewana3_1290 0.50 +0.7
1,501,556 + Shewana3_1290 0.68 +1.9
1,501,681 + Shewana3_1290 0.80 +1.1
1,501,764 + Shewana3_1290 0.89 +0.6
1,502,307 - Shewana3_1291 0.34 +1.0
1,502,368 + Shewana3_1291 0.38 +0.4
1,502,376 - Shewana3_1291 0.39 +0.0
1,502,376 - Shewana3_1291 0.39 +0.3
1,502,610 - Shewana3_1291 0.57 +0.9

Or see this region's nucleotide sequence