Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1285 and Shewana3_1286 overlap by 4 nucleotides Shewana3_1286 and Shewana3_1287 are separated by 12 nucleotides Shewana3_1287 and Shewana3_1288 overlap by 4 nucleotides
Shewana3_1285: Shewana3_1285 - conjugal transfer ATPase TrbE (RefSeq), at 1,495,263 to 1,497,713
_1285
Shewana3_1286: Shewana3_1286 - conjugal transfer protein TrbJ (RefSeq), at 1,497,710 to 1,498,453
_1286
Shewana3_1287: Shewana3_1287 - putative lipoprotein (RefSeq), at 1,498,466 to 1,498,783
_1287
Shewana3_1288: Shewana3_1288 - conjugal transfer protein TrbL (RefSeq), at 1,498,780 to 1,500,162
_1288
Position (kb)
1497
1498
1499 Strain fitness (log2 ratio)
-2
-1
0
1 at 1496.721 kb on - strand, within Shewana3_1285 at 1496.895 kb on + strand, within Shewana3_1285 at 1496.898 kb on - strand, within Shewana3_1285 at 1496.900 kb on + strand, within Shewana3_1285 at 1496.903 kb on - strand, within Shewana3_1285 at 1496.903 kb on - strand, within Shewana3_1285 at 1497.050 kb on - strand, within Shewana3_1285 at 1497.068 kb on - strand, within Shewana3_1285 at 1497.147 kb on + strand, within Shewana3_1285 at 1497.449 kb on + strand, within Shewana3_1285 at 1497.592 kb on - strand at 1497.724 kb on - strand at 1497.881 kb on + strand, within Shewana3_1286 at 1497.901 kb on - strand, within Shewana3_1286 at 1498.009 kb on + strand, within Shewana3_1286 at 1498.009 kb on + strand, within Shewana3_1286 at 1498.056 kb on - strand, within Shewana3_1286 at 1498.094 kb on + strand, within Shewana3_1286 at 1498.124 kb on + strand, within Shewana3_1286 at 1498.214 kb on + strand, within Shewana3_1286 at 1498.309 kb on + strand, within Shewana3_1286 at 1498.317 kb on - strand, within Shewana3_1286 at 1498.564 kb on + strand, within Shewana3_1287 at 1498.917 kb on + strand at 1498.917 kb on + strand at 1498.917 kb on + strand at 1498.917 kb on + strand at 1498.925 kb on - strand, within Shewana3_1288 at 1498.945 kb on - strand, within Shewana3_1288 at 1498.955 kb on - strand, within Shewana3_1288 at 1499.094 kb on - strand, within Shewana3_1288 at 1499.194 kb on - strand, within Shewana3_1288 at 1499.300 kb on - strand, within Shewana3_1288 at 1499.346 kb on + strand, within Shewana3_1288 at 1499.385 kb on - strand, within Shewana3_1288
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,496,721 - Shewana3_1285 0.59 +0.3 1,496,895 + Shewana3_1285 0.67 +0.3 1,496,898 - Shewana3_1285 0.67 +0.9 1,496,900 + Shewana3_1285 0.67 +1.4 1,496,903 - Shewana3_1285 0.67 -0.1 1,496,903 - Shewana3_1285 0.67 +0.6 1,497,050 - Shewana3_1285 0.73 -0.0 1,497,068 - Shewana3_1285 0.74 -0.2 1,497,147 + Shewana3_1285 0.77 -0.1 1,497,449 + Shewana3_1285 0.89 -0.6 1,497,592 - -0.8 1,497,724 - +0.0 1,497,881 + Shewana3_1286 0.23 -1.3 1,497,901 - Shewana3_1286 0.26 +0.4 1,498,009 + Shewana3_1286 0.40 +0.4 1,498,009 + Shewana3_1286 0.40 -0.0 1,498,056 - Shewana3_1286 0.47 +0.2 1,498,094 + Shewana3_1286 0.52 -0.1 1,498,124 + Shewana3_1286 0.56 -0.4 1,498,214 + Shewana3_1286 0.68 +0.0 1,498,309 + Shewana3_1286 0.81 -0.2 1,498,317 - Shewana3_1286 0.82 +0.6 1,498,564 + Shewana3_1287 0.31 -2.7 1,498,917 + +0.2 1,498,917 + +0.4 1,498,917 + +0.5 1,498,917 + +1.2 1,498,925 - Shewana3_1288 0.10 +0.4 1,498,945 - Shewana3_1288 0.12 -0.1 1,498,955 - Shewana3_1288 0.13 +0.8 1,499,094 - Shewana3_1288 0.23 +0.6 1,499,194 - Shewana3_1288 0.30 +0.8 1,499,300 - Shewana3_1288 0.38 +0.0 1,499,346 + Shewana3_1288 0.41 +0.2 1,499,385 - Shewana3_1288 0.44 +0.5
Or see this region's nucleotide sequence