Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1264 and Shewana3_1265 overlap by 4 nucleotides Shewana3_1265 and Shewana3_1266 overlap by 4 nucleotides Shewana3_1266 and Shewana3_1267 overlap by 4 nucleotides Shewana3_1267 and Shewana3_1268 are separated by 412 nucleotides
Shewana3_1264: Shewana3_1264 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,478,666 to 1,479,304
_1264
Shewana3_1265: Shewana3_1265 - hypothetical protein (RefSeq), at 1,479,301 to 1,479,552
_1265
Shewana3_1266: Shewana3_1266 - hypothetical protein (RefSeq), at 1,479,549 to 1,480,082
_1266
Shewana3_1267: Shewana3_1267 - TraF peptidase (RefSeq), at 1,480,079 to 1,480,666
_1267
Shewana3_1268: Shewana3_1268 - hypothetical protein (RefSeq), at 1,481,079 to 1,483,052
_1268
Position (kb)
1480
1481 Strain fitness (log2 ratio)
-1
0
1 at 1479.105 kb on + strand, within Shewana3_1264 at 1479.164 kb on - strand, within Shewana3_1264 at 1479.274 kb on + strand at 1479.274 kb on + strand at 1479.366 kb on + strand, within Shewana3_1265 at 1479.411 kb on + strand, within Shewana3_1265 at 1479.548 kb on - strand at 1479.554 kb on + strand at 1479.740 kb on - strand, within Shewana3_1266 at 1479.838 kb on + strand, within Shewana3_1266 at 1479.861 kb on - strand, within Shewana3_1266 at 1479.952 kb on + strand, within Shewana3_1266 at 1479.960 kb on - strand, within Shewana3_1266 at 1479.960 kb on - strand, within Shewana3_1266 at 1480.005 kb on - strand, within Shewana3_1266 at 1480.094 kb on + strand at 1480.209 kb on - strand, within Shewana3_1267 at 1480.226 kb on + strand, within Shewana3_1267 at 1480.234 kb on - strand, within Shewana3_1267 at 1480.281 kb on - strand, within Shewana3_1267 at 1480.289 kb on + strand, within Shewana3_1267 at 1480.371 kb on - strand, within Shewana3_1267 at 1480.371 kb on - strand, within Shewana3_1267 at 1480.416 kb on + strand, within Shewana3_1267 at 1480.488 kb on + strand, within Shewana3_1267 at 1480.570 kb on - strand, within Shewana3_1267 at 1480.772 kb on - strand at 1480.772 kb on - strand at 1480.811 kb on - strand at 1481.068 kb on - strand at 1481.204 kb on + strand at 1481.247 kb on + strand at 1481.247 kb on + strand at 1481.464 kb on + strand, within Shewana3_1268 at 1481.522 kb on + strand, within Shewana3_1268 at 1481.584 kb on - strand, within Shewana3_1268
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,479,105 + Shewana3_1264 0.69 +0.7 1,479,164 - Shewana3_1264 0.78 +0.5 1,479,274 + +1.4 1,479,274 + +0.5 1,479,366 + Shewana3_1265 0.26 -0.1 1,479,411 + Shewana3_1265 0.44 +0.1 1,479,548 - +0.7 1,479,554 + -0.6 1,479,740 - Shewana3_1266 0.36 +0.2 1,479,838 + Shewana3_1266 0.54 -0.2 1,479,861 - Shewana3_1266 0.58 -0.2 1,479,952 + Shewana3_1266 0.75 +0.1 1,479,960 - Shewana3_1266 0.77 -0.7 1,479,960 - Shewana3_1266 0.77 -0.7 1,480,005 - Shewana3_1266 0.85 -0.1 1,480,094 + -0.3 1,480,209 - Shewana3_1267 0.22 +1.0 1,480,226 + Shewana3_1267 0.25 -1.1 1,480,234 - Shewana3_1267 0.26 -0.0 1,480,281 - Shewana3_1267 0.34 +0.2 1,480,289 + Shewana3_1267 0.36 -0.3 1,480,371 - Shewana3_1267 0.50 +0.6 1,480,371 - Shewana3_1267 0.50 +0.1 1,480,416 + Shewana3_1267 0.57 +0.6 1,480,488 + Shewana3_1267 0.70 +0.1 1,480,570 - Shewana3_1267 0.84 +1.1 1,480,772 - +0.1 1,480,772 - +0.5 1,480,811 - +0.2 1,481,068 - +1.1 1,481,204 + +0.2 1,481,247 + -0.1 1,481,247 + +0.2 1,481,464 + Shewana3_1268 0.20 +0.9 1,481,522 + Shewana3_1268 0.22 -0.1 1,481,584 - Shewana3_1268 0.26 +0.2
Or see this region's nucleotide sequence