Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1263

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1261 and Shewana3_1262 are separated by 83 nucleotidesShewana3_1262 and Shewana3_1263 are separated by 26 nucleotidesShewana3_1263 and Shewana3_1264 are separated by 286 nucleotidesShewana3_1264 and Shewana3_1265 overlap by 4 nucleotides Shewana3_1261: Shewana3_1261 - hypothetical protein (RefSeq), at 1,476,330 to 1,477,127 _1261 Shewana3_1262: Shewana3_1262 - hypothetical protein (RefSeq), at 1,477,211 to 1,477,495 _1262 Shewana3_1263: Shewana3_1263 - putative replication initiator and transcription repressor protein (RefSeq), at 1,477,522 to 1,478,379 _1263 Shewana3_1264: Shewana3_1264 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,478,666 to 1,479,304 _1264 Shewana3_1265: Shewana3_1265 - hypothetical protein (RefSeq), at 1,479,301 to 1,479,552 _1265 Position (kb) 1477 1478 1479Strain fitness (log2 ratio) -1 0 1at 1476.545 kb on - strand, within Shewana3_1261at 1476.755 kb on + strand, within Shewana3_1261at 1476.787 kb on + strand, within Shewana3_1261at 1476.859 kb on - strand, within Shewana3_1261at 1476.915 kb on + strand, within Shewana3_1261at 1477.154 kb on + strandat 1477.302 kb on + strand, within Shewana3_1262at 1477.310 kb on - strand, within Shewana3_1262at 1477.384 kb on + strand, within Shewana3_1262at 1477.500 kb on - strandat 1477.587 kb on - strandat 1477.613 kb on - strand, within Shewana3_1263at 1477.622 kb on + strand, within Shewana3_1263at 1477.673 kb on + strand, within Shewana3_1263at 1478.044 kb on - strand, within Shewana3_1263at 1478.132 kb on + strand, within Shewana3_1263at 1478.132 kb on + strand, within Shewana3_1263at 1478.150 kb on + strand, within Shewana3_1263at 1478.204 kb on - strand, within Shewana3_1263at 1478.294 kb on - strandat 1478.305 kb on - strandat 1478.592 kb on + strandat 1478.593 kb on - strandat 1478.649 kb on + strandat 1478.736 kb on + strand, within Shewana3_1264at 1478.807 kb on - strand, within Shewana3_1264at 1478.833 kb on - strand, within Shewana3_1264at 1478.847 kb on - strand, within Shewana3_1264at 1478.847 kb on - strand, within Shewana3_1264at 1478.847 kb on - strand, within Shewana3_1264at 1478.852 kb on + strand, within Shewana3_1264at 1478.996 kb on - strand, within Shewana3_1264at 1479.043 kb on - strand, within Shewana3_1264at 1479.105 kb on + strand, within Shewana3_1264at 1479.164 kb on - strand, within Shewana3_1264at 1479.274 kb on + strandat 1479.274 kb on + strandat 1479.366 kb on + strand, within Shewana3_1265

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,476,545 - Shewana3_1261 0.27 +1.3
1,476,755 + Shewana3_1261 0.53 +0.1
1,476,787 + Shewana3_1261 0.57 +0.2
1,476,859 - Shewana3_1261 0.66 +0.0
1,476,915 + Shewana3_1261 0.73 +0.1
1,477,154 + +0.7
1,477,302 + Shewana3_1262 0.32 +1.4
1,477,310 - Shewana3_1262 0.35 -0.2
1,477,384 + Shewana3_1262 0.61 +0.5
1,477,500 - +0.2
1,477,587 - +0.2
1,477,613 - Shewana3_1263 0.11 +0.4
1,477,622 + Shewana3_1263 0.12 -0.1
1,477,673 + Shewana3_1263 0.18 +0.9
1,478,044 - Shewana3_1263 0.61 +0.0
1,478,132 + Shewana3_1263 0.71 -0.0
1,478,132 + Shewana3_1263 0.71 -0.2
1,478,150 + Shewana3_1263 0.73 +0.2
1,478,204 - Shewana3_1263 0.79 -0.2
1,478,294 - -0.3
1,478,305 - +0.6
1,478,592 + +0.5
1,478,593 - +0.6
1,478,649 + -0.0
1,478,736 + Shewana3_1264 0.11 -0.2
1,478,807 - Shewana3_1264 0.22 +0.6
1,478,833 - Shewana3_1264 0.26 +1.2
1,478,847 - Shewana3_1264 0.28 -0.4
1,478,847 - Shewana3_1264 0.28 -0.2
1,478,847 - Shewana3_1264 0.28 -0.3
1,478,852 + Shewana3_1264 0.29 +0.2
1,478,996 - Shewana3_1264 0.52 +0.1
1,479,043 - Shewana3_1264 0.59 +0.5
1,479,105 + Shewana3_1264 0.69 +0.7
1,479,164 - Shewana3_1264 0.78 +0.5
1,479,274 + +1.4
1,479,274 + +0.5
1,479,366 + Shewana3_1265 0.26 -0.1

Or see this region's nucleotide sequence