Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1248 and Shewana3_1249 are separated by 165 nucleotides Shewana3_1249 and Shewana3_1250 are separated by 372 nucleotides
Shewana3_1248: Shewana3_1248 - hypothetical protein (RefSeq), at 1,461,517 to 1,462,800
_1248
Shewana3_1249: Shewana3_1249 - ATPase-like protein (RefSeq), at 1,462,966 to 1,463,565
_1249
Shewana3_1250: Shewana3_1250 - integrase catalytic subunit (RefSeq), at 1,463,938 to 1,465,479
_1250
Position (kb)
1462
1463
1464 Strain fitness (log2 ratio)
-2
-1
0
1 at 1462.517 kb on + strand, within Shewana3_1248 at 1462.806 kb on + strand at 1463.036 kb on + strand, within Shewana3_1249 at 1463.042 kb on - strand, within Shewana3_1249 at 1463.198 kb on - strand, within Shewana3_1249 at 1463.260 kb on + strand, within Shewana3_1249 at 1463.318 kb on + strand, within Shewana3_1249 at 1463.356 kb on - strand, within Shewana3_1249 at 1463.615 kb on - strand at 1463.809 kb on - strand at 1463.957 kb on - strand at 1464.029 kb on + strand at 1464.133 kb on + strand, within Shewana3_1250 at 1464.138 kb on + strand, within Shewana3_1250 at 1464.141 kb on - strand, within Shewana3_1250 at 1464.187 kb on + strand, within Shewana3_1250 at 1464.240 kb on - strand, within Shewana3_1250 at 1464.243 kb on - strand, within Shewana3_1250 at 1464.261 kb on + strand, within Shewana3_1250 at 1464.287 kb on + strand, within Shewana3_1250 at 1464.469 kb on + strand, within Shewana3_1250 at 1464.502 kb on - strand, within Shewana3_1250
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,462,517 + Shewana3_1248 0.78 -2.6 1,462,806 + -1.2 1,463,036 + Shewana3_1249 0.12 -2.7 1,463,042 - Shewana3_1249 0.13 -0.6 1,463,198 - Shewana3_1249 0.39 -1.8 1,463,260 + Shewana3_1249 0.49 -0.2 1,463,318 + Shewana3_1249 0.59 -1.7 1,463,356 - Shewana3_1249 0.65 -0.9 1,463,615 - -0.6 1,463,809 - -1.0 1,463,957 - -0.6 1,464,029 + -0.8 1,464,133 + Shewana3_1250 0.13 -0.4 1,464,138 + Shewana3_1250 0.13 -1.1 1,464,141 - Shewana3_1250 0.13 -0.0 1,464,187 + Shewana3_1250 0.16 -0.2 1,464,240 - Shewana3_1250 0.20 -0.2 1,464,243 - Shewana3_1250 0.20 -0.3 1,464,261 + Shewana3_1250 0.21 -1.4 1,464,287 + Shewana3_1250 0.23 +0.5 1,464,469 + Shewana3_1250 0.34 -0.5 1,464,502 - Shewana3_1250 0.37 +0.1
Or see this region's nucleotide sequence