Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1216 and Shewana3_1217 are separated by 211 nucleotides Shewana3_1217 and Shewana3_1218 are separated by 127 nucleotides Shewana3_1218 and Shewana3_1219 are separated by 167 nucleotides Shewana3_1219 and Shewana3_1220 are separated by 63 nucleotides
Shewana3_1216: Shewana3_1216 - acetyltransferase (RefSeq), at 1,421,348 to 1,421,806
_1216
Shewana3_1217: Shewana3_1217 - hypothetical protein (RefSeq), at 1,422,018 to 1,422,227
_1217
Shewana3_1218: Shewana3_1218 - NrfJ-related protein (RefSeq), at 1,422,355 to 1,422,657
_1218
Shewana3_1219: Shewana3_1219 - acetyltransferase (RefSeq), at 1,422,825 to 1,423,346
_1219
Shewana3_1220: Shewana3_1220 - acetyltransferase (RefSeq), at 1,423,410 to 1,423,940
_1220
Position (kb)
1422
1423 Strain fitness (log2 ratio)
-2
-1
0
1 at 1421.399 kb on + strand, within Shewana3_1216 at 1421.487 kb on - strand, within Shewana3_1216 at 1421.624 kb on + strand, within Shewana3_1216 at 1421.656 kb on + strand, within Shewana3_1216 at 1421.664 kb on + strand, within Shewana3_1216 at 1421.825 kb on + strand at 1421.825 kb on + strand at 1421.837 kb on + strand at 1421.837 kb on + strand at 1421.845 kb on - strand at 1422.104 kb on + strand, within Shewana3_1217 at 1422.188 kb on - strand, within Shewana3_1217 at 1422.201 kb on - strand, within Shewana3_1217 at 1422.226 kb on - strand at 1422.472 kb on + strand, within Shewana3_1218 at 1422.887 kb on - strand, within Shewana3_1219 at 1422.956 kb on + strand, within Shewana3_1219 at 1422.964 kb on - strand, within Shewana3_1219 at 1422.964 kb on - strand, within Shewana3_1219 at 1423.111 kb on + strand, within Shewana3_1219 at 1423.158 kb on - strand, within Shewana3_1219 at 1423.270 kb on - strand, within Shewana3_1219 at 1423.471 kb on + strand, within Shewana3_1220 at 1423.473 kb on + strand, within Shewana3_1220 at 1423.630 kb on + strand, within Shewana3_1220 at 1423.645 kb on - strand, within Shewana3_1220
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,421,399 + Shewana3_1216 0.11 +0.5 1,421,487 - Shewana3_1216 0.30 -2.3 1,421,624 + Shewana3_1216 0.60 +0.2 1,421,656 + Shewana3_1216 0.67 +0.3 1,421,664 + Shewana3_1216 0.69 -0.2 1,421,825 + -1.0 1,421,825 + -0.2 1,421,837 + -1.7 1,421,837 + -0.9 1,421,845 - -0.5 1,422,104 + Shewana3_1217 0.41 -0.0 1,422,188 - Shewana3_1217 0.81 -1.7 1,422,201 - Shewana3_1217 0.87 -1.1 1,422,226 - -1.3 1,422,472 + Shewana3_1218 0.39 +1.4 1,422,887 - Shewana3_1219 0.12 +1.2 1,422,956 + Shewana3_1219 0.25 -0.9 1,422,964 - Shewana3_1219 0.27 +0.2 1,422,964 - Shewana3_1219 0.27 +0.1 1,423,111 + Shewana3_1219 0.55 +0.4 1,423,158 - Shewana3_1219 0.64 -0.4 1,423,270 - Shewana3_1219 0.85 -0.8 1,423,471 + Shewana3_1220 0.11 -0.0 1,423,473 + Shewana3_1220 0.12 +0.5 1,423,630 + Shewana3_1220 0.41 -0.7 1,423,645 - Shewana3_1220 0.44 -0.4
Or see this region's nucleotide sequence