Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1214

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1213 and Shewana3_1214 are separated by 136 nucleotidesShewana3_1214 and Shewana3_1215 overlap by 41 nucleotides Shewana3_1213: Shewana3_1213 - extracellular solute-binding protein (RefSeq), at 1,417,962 to 1,419,455 _1213 Shewana3_1214: Shewana3_1214 - CopG family transcriptional regulator (RefSeq), at 1,419,592 to 1,420,074 _1214 Shewana3_1215: Shewana3_1215 - hypothetical protein (RefSeq), at 1,420,034 to 1,420,816 _1215 Position (kb) 1419 1420 1421Strain fitness (log2 ratio) -2 -1 0 1at 1418.624 kb on + strand, within Shewana3_1213at 1418.677 kb on - strand, within Shewana3_1213at 1418.891 kb on - strand, within Shewana3_1213at 1418.907 kb on - strand, within Shewana3_1213at 1419.204 kb on - strand, within Shewana3_1213at 1419.592 kb on - strandat 1419.644 kb on + strand, within Shewana3_1214at 1419.652 kb on - strand, within Shewana3_1214at 1419.809 kb on + strand, within Shewana3_1214at 1419.945 kb on + strand, within Shewana3_1214at 1420.031 kb on + strandat 1420.076 kb on - strandat 1420.148 kb on + strand, within Shewana3_1215at 1420.151 kb on - strand, within Shewana3_1215at 1420.221 kb on + strand, within Shewana3_1215at 1420.348 kb on + strand, within Shewana3_1215at 1420.411 kb on + strand, within Shewana3_1215at 1420.585 kb on + strand, within Shewana3_1215at 1420.593 kb on - strand, within Shewana3_1215at 1420.648 kb on + strand, within Shewana3_1215at 1420.832 kb on + strandat 1420.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,418,624 + Shewana3_1213 0.44 -0.2
1,418,677 - Shewana3_1213 0.48 -0.3
1,418,891 - Shewana3_1213 0.62 -2.2
1,418,907 - Shewana3_1213 0.63 -0.3
1,419,204 - Shewana3_1213 0.83 +0.4
1,419,592 - +0.0
1,419,644 + Shewana3_1214 0.11 -0.4
1,419,652 - Shewana3_1214 0.12 -1.4
1,419,809 + Shewana3_1214 0.45 -0.0
1,419,945 + Shewana3_1214 0.73 -1.0
1,420,031 + +1.2
1,420,076 - -0.3
1,420,148 + Shewana3_1215 0.15 -1.1
1,420,151 - Shewana3_1215 0.15 -2.1
1,420,221 + Shewana3_1215 0.24 +0.1
1,420,348 + Shewana3_1215 0.40 -0.5
1,420,411 + Shewana3_1215 0.48 -2.3
1,420,585 + Shewana3_1215 0.70 -1.4
1,420,593 - Shewana3_1215 0.71 -0.4
1,420,648 + Shewana3_1215 0.78 -1.7
1,420,832 + -2.1
1,420,861 - +0.8

Or see this region's nucleotide sequence