Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1198 and Shewana3_1199 are separated by 61 nucleotides Shewana3_1199 and Shewana3_1200 are separated by 28 nucleotides Shewana3_1200 and Shewana3_1201 are separated by 68 nucleotides Shewana3_1201 and Shewana3_1202 are separated by 149 nucleotides
Shewana3_1198: Shewana3_1198 - ferrochelatase (RefSeq), at 1,404,916 to 1,405,899
_1198
Shewana3_1199: Shewana3_1199 - Holliday junction resolvase-like protein (RefSeq), at 1,405,961 to 1,406,386
_1199
Shewana3_1200: Shewana3_1200 - hypothetical protein (RefSeq), at 1,406,415 to 1,406,978
_1200
Shewana3_1201: Shewana3_1201 - translation initiation factor Sui1 (RefSeq), at 1,407,047 to 1,407,376
_1201
Shewana3_1202: Shewana3_1202 - hypothetical protein (RefSeq), at 1,407,526 to 1,407,840
_1202
Position (kb)
1406
1407 Strain fitness (log2 ratio)
-2
-1
0
1 at 1405.472 kb on + strand, within Shewana3_1198 at 1405.661 kb on - strand, within Shewana3_1198 at 1405.661 kb on - strand, within Shewana3_1198 at 1405.662 kb on + strand, within Shewana3_1198 at 1405.676 kb on - strand, within Shewana3_1198 at 1406.458 kb on - strand at 1406.545 kb on - strand, within Shewana3_1200 at 1406.563 kb on - strand, within Shewana3_1200 at 1406.660 kb on - strand, within Shewana3_1200 at 1406.726 kb on - strand, within Shewana3_1200 at 1406.997 kb on - strand at 1407.195 kb on - strand, within Shewana3_1201 at 1407.244 kb on - strand, within Shewana3_1201 at 1407.244 kb on - strand, within Shewana3_1201 at 1407.501 kb on + strand at 1407.678 kb on - strand, within Shewana3_1202 at 1407.751 kb on - strand, within Shewana3_1202 at 1407.758 kb on - strand, within Shewana3_1202 at 1407.916 kb on - strand at 1407.939 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,405,472 + Shewana3_1198 0.57 -0.7 1,405,661 - Shewana3_1198 0.76 -0.3 1,405,661 - Shewana3_1198 0.76 +1.0 1,405,662 + Shewana3_1198 0.76 +0.3 1,405,676 - Shewana3_1198 0.77 +0.0 1,406,458 - +0.9 1,406,545 - Shewana3_1200 0.23 +0.8 1,406,563 - Shewana3_1200 0.26 +0.7 1,406,660 - Shewana3_1200 0.43 +0.8 1,406,726 - Shewana3_1200 0.55 +0.9 1,406,997 - +0.6 1,407,195 - Shewana3_1201 0.45 -0.2 1,407,244 - Shewana3_1201 0.60 -0.0 1,407,244 - Shewana3_1201 0.60 -0.4 1,407,501 + -2.6 1,407,678 - Shewana3_1202 0.48 +0.8 1,407,751 - Shewana3_1202 0.71 +0.6 1,407,758 - Shewana3_1202 0.74 -1.2 1,407,916 - +0.1 1,407,939 + -1.0
Or see this region's nucleotide sequence