Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1193 and Shewana3_1194 are separated by 221 nucleotides Shewana3_1194 and Shewana3_1195 are separated by 35 nucleotides Shewana3_1195 and Shewana3_1196 are separated by 9 nucleotides
Shewana3_1193: Shewana3_1193 - pyrroline-5-carboxylate reductase (RefSeq), at 1,400,185 to 1,401,003
_1193
Shewana3_1194: Shewana3_1194 - hypothetical protein (RefSeq), at 1,401,225 to 1,401,941
_1194
Shewana3_1195: Shewana3_1195 - pilus retraction ATPase PilT (RefSeq), at 1,401,977 to 1,403,014
_1195
Shewana3_1196: Shewana3_1196 - twitching motility protein (RefSeq), at 1,403,024 to 1,404,136
_1196
Position (kb)
1401
1402
1403
1404 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1400.998 kb on + strand at 1401.022 kb on + strand at 1401.022 kb on + strand at 1401.030 kb on - strand at 1401.130 kb on + strand at 1401.250 kb on + strand at 1401.314 kb on - strand, within Shewana3_1194 at 1401.605 kb on - strand, within Shewana3_1194 at 1401.730 kb on + strand, within Shewana3_1194 at 1402.025 kb on + strand at 1402.025 kb on + strand at 1402.115 kb on + strand, within Shewana3_1195 at 1402.123 kb on - strand, within Shewana3_1195 at 1402.130 kb on - strand, within Shewana3_1195 at 1402.135 kb on - strand, within Shewana3_1195 at 1402.135 kb on - strand, within Shewana3_1195 at 1402.135 kb on - strand, within Shewana3_1195 at 1402.142 kb on - strand, within Shewana3_1195 at 1402.201 kb on + strand, within Shewana3_1195 at 1402.243 kb on - strand, within Shewana3_1195 at 1402.527 kb on + strand, within Shewana3_1195 at 1402.546 kb on - strand, within Shewana3_1195 at 1402.726 kb on - strand, within Shewana3_1195 at 1402.915 kb on + strand at 1402.934 kb on + strand at 1402.934 kb on + strand at 1402.941 kb on + strand at 1403.593 kb on - strand, within Shewana3_1196 at 1403.689 kb on + strand, within Shewana3_1196 at 1403.697 kb on - strand, within Shewana3_1196 at 1403.760 kb on + strand, within Shewana3_1196 at 1403.971 kb on - strand, within Shewana3_1196
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,400,998 + -0.3 1,401,022 + -2.6 1,401,022 + -2.1 1,401,030 - -0.1 1,401,130 + -1.0 1,401,250 + -0.4 1,401,314 - Shewana3_1194 0.12 -0.0 1,401,605 - Shewana3_1194 0.53 -0.3 1,401,730 + Shewana3_1194 0.70 -0.4 1,402,025 + +1.8 1,402,025 + -0.7 1,402,115 + Shewana3_1195 0.13 +0.0 1,402,123 - Shewana3_1195 0.14 -1.0 1,402,130 - Shewana3_1195 0.15 -1.0 1,402,135 - Shewana3_1195 0.15 -0.2 1,402,135 - Shewana3_1195 0.15 -1.2 1,402,135 - Shewana3_1195 0.15 -0.3 1,402,142 - Shewana3_1195 0.16 -0.4 1,402,201 + Shewana3_1195 0.22 -0.5 1,402,243 - Shewana3_1195 0.26 -1.0 1,402,527 + Shewana3_1195 0.53 +0.1 1,402,546 - Shewana3_1195 0.55 -0.7 1,402,726 - Shewana3_1195 0.72 -0.4 1,402,915 + +0.9 1,402,934 + +0.4 1,402,934 + +0.5 1,402,941 + +1.1 1,403,593 - Shewana3_1196 0.51 -2.0 1,403,689 + Shewana3_1196 0.60 +1.3 1,403,697 - Shewana3_1196 0.60 +0.1 1,403,760 + Shewana3_1196 0.66 +0.5 1,403,971 - Shewana3_1196 0.85 +3.0
Or see this region's nucleotide sequence