Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_R0051 and Shewana3_R0052 are separated by 6 nucleotides Shewana3_R0052 and Shewana3_1178 are separated by 388 nucleotides Shewana3_1178 and Shewana3_1179 are separated by 4 nucleotides Shewana3_1179 and Shewana3_1180 are separated by 84 nucleotides Shewana3_1180 and Shewana3_1181 are separated by 9 nucleotides
Shewana3_R0051: Shewana3_R0051 - tRNA-Thr (RefSeq), at 1,386,491 to 1,386,566
_R0051
Shewana3_R0052: Shewana3_R0052 - tRNA-Phe (RefSeq), at 1,386,573 to 1,386,648
_R0052
Shewana3_1178: Shewana3_1178 - cytochrome B561 (RefSeq), at 1,387,037 to 1,387,588
_1178
Shewana3_1179: Shewana3_1179 - hypothetical protein (RefSeq), at 1,387,593 to 1,388,168
_1179
Shewana3_1180: Shewana3_1180 - hypothetical protein (RefSeq), at 1,388,253 to 1,388,531
_1180
Shewana3_1181: Shewana3_1181 - A/G-specific DNA-adenine glycosylase (RefSeq), at 1,388,541 to 1,389,659
_1181
Position (kb)
1387
1388 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1386.170 kb on - strand at 1386.227 kb on - strand at 1386.294 kb on + strand at 1386.302 kb on - strand at 1386.373 kb on + strand at 1386.426 kb on + strand at 1387.029 kb on - strand at 1387.029 kb on - strand at 1387.039 kb on - strand at 1387.195 kb on + strand, within Shewana3_1178 at 1387.252 kb on + strand, within Shewana3_1178 at 1387.294 kb on + strand, within Shewana3_1178 at 1387.558 kb on + strand at 1388.174 kb on + strand at 1388.250 kb on + strand at 1388.303 kb on - strand, within Shewana3_1180 at 1388.348 kb on + strand, within Shewana3_1180 at 1388.461 kb on + strand, within Shewana3_1180 at 1388.472 kb on - strand, within Shewana3_1180
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,386,170 - -0.3 1,386,227 - -3.3 1,386,294 + -2.4 1,386,302 - -0.7 1,386,373 + -1.4 1,386,426 + +0.0 1,387,029 - +0.4 1,387,029 - -2.0 1,387,039 - -1.7 1,387,195 + Shewana3_1178 0.29 +0.5 1,387,252 + Shewana3_1178 0.39 +1.2 1,387,294 + Shewana3_1178 0.47 +0.5 1,387,558 + +0.4 1,388,174 + +0.2 1,388,250 + -0.8 1,388,303 - Shewana3_1180 0.18 +1.5 1,388,348 + Shewana3_1180 0.34 -1.9 1,388,461 + Shewana3_1180 0.75 -0.3 1,388,472 - Shewana3_1180 0.78 +1.0
Or see this region's nucleotide sequence