Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1136 and Shewana3_1137 are separated by 30 nucleotides Shewana3_1137 and Shewana3_1138 are separated by 193 nucleotides Shewana3_1138 and thrA are separated by 642 nucleotides
Shewana3_1136: Shewana3_1136 - Trp operon repressor (RefSeq), at 1,340,636 to 1,340,911
_1136
Shewana3_1137: Shewana3_1137 - hypothetical protein (RefSeq), at 1,340,942 to 1,341,319
_1137
Shewana3_1138: Shewana3_1138 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 1,341,513 to 1,342,181
_1138
Shewana3_1139: thrA - bifunctional aspartokinase I/homeserine dehydrogenase I (RefSeq), at 1,342,824 to 1,345,292
thrA
Position (kb)
1341
1342
1343 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1340.541 kb on - strand at 1340.560 kb on - strand at 1340.688 kb on + strand, within Shewana3_1136 at 1340.754 kb on + strand, within Shewana3_1136 at 1340.845 kb on - strand, within Shewana3_1136 at 1340.933 kb on - strand at 1340.940 kb on + strand at 1340.985 kb on - strand, within Shewana3_1137 at 1341.106 kb on - strand, within Shewana3_1137 at 1341.154 kb on + strand, within Shewana3_1137 at 1341.202 kb on + strand, within Shewana3_1137 at 1341.250 kb on + strand, within Shewana3_1137 at 1341.266 kb on + strand, within Shewana3_1137 at 1341.482 kb on + strand at 1341.490 kb on - strand at 1341.514 kb on - strand at 1341.863 kb on - strand, within Shewana3_1138 at 1341.949 kb on + strand, within Shewana3_1138 at 1341.957 kb on - strand, within Shewana3_1138 at 1341.983 kb on - strand, within Shewana3_1138 at 1342.164 kb on + strand at 1342.164 kb on + strand at 1342.254 kb on + strand at 1342.254 kb on + strand at 1342.342 kb on + strand at 1342.371 kb on - strand at 1342.664 kb on - strand at 1342.733 kb on - strand at 1343.146 kb on + strand, within thrA at 1343.146 kb on + strand, within thrA at 1343.146 kb on + strand, within thrA at 1343.154 kb on - strand, within thrA
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,340,541 - +0.4 1,340,560 - -0.9 1,340,688 + Shewana3_1136 0.19 -0.5 1,340,754 + Shewana3_1136 0.43 -1.1 1,340,845 - Shewana3_1136 0.76 +2.0 1,340,933 - -0.2 1,340,940 + -0.8 1,340,985 - Shewana3_1137 0.11 -0.6 1,341,106 - Shewana3_1137 0.43 -0.3 1,341,154 + Shewana3_1137 0.56 -1.2 1,341,202 + Shewana3_1137 0.69 -0.8 1,341,250 + Shewana3_1137 0.81 -0.5 1,341,266 + Shewana3_1137 0.86 +1.0 1,341,482 + +0.2 1,341,490 - +0.8 1,341,514 - +1.5 1,341,863 - Shewana3_1138 0.52 +1.3 1,341,949 + Shewana3_1138 0.65 -0.6 1,341,957 - Shewana3_1138 0.66 +0.7 1,341,983 - Shewana3_1138 0.70 +0.9 1,342,164 + -0.3 1,342,164 + -0.1 1,342,254 + +0.2 1,342,254 + +0.4 1,342,342 + +0.9 1,342,371 - +0.4 1,342,664 - +0.4 1,342,733 - -2.1 1,343,146 + thrA Shewana3_1139 0.13 -0.5 1,343,146 + thrA Shewana3_1139 0.13 +0.4 1,343,146 + thrA Shewana3_1139 0.13 -0.2 1,343,154 - thrA Shewana3_1139 0.13 -2.4
Or see this region's nucleotide sequence