Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1109 and rumA are separated by 101 nucleotides rumA and Shewana3_1111 are separated by 189 nucleotides
Shewana3_1109: Shewana3_1109 - hybrid sensory histidine kinase BarA (RefSeq), at 1,302,416 to 1,305,223
_1109
Shewana3_1110: rumA - 23S rRNA 5-methyluridine methyltransferase (RefSeq), at 1,305,325 to 1,306,674
rumA
Shewana3_1111: Shewana3_1111 - (p)ppGpp synthetase I, SpoT/RelA (RefSeq), at 1,306,864 to 1,309,071
_1111
Position (kb) 1305
1306
1307 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1304.397 kb on - strand, within Shewana3_1109 at 1304.515 kb on + strand, within Shewana3_1109 at 1304.546 kb on - strand, within Shewana3_1109 at 1304.615 kb on + strand, within Shewana3_1109 at 1304.678 kb on + strand, within Shewana3_1109 at 1304.681 kb on - strand, within Shewana3_1109 at 1304.681 kb on - strand, within Shewana3_1109 at 1304.683 kb on - strand, within Shewana3_1109 at 1304.823 kb on - strand, within Shewana3_1109 at 1304.829 kb on - strand, within Shewana3_1109 at 1304.871 kb on + strand, within Shewana3_1109 at 1305.071 kb on + strand at 1305.192 kb on - strand at 1305.194 kb on + strand at 1305.218 kb on + strand at 1305.218 kb on + strand at 1305.218 kb on + strand at 1305.425 kb on - strand at 1305.528 kb on + strand, within rumA at 1305.551 kb on - strand, within rumA at 1305.595 kb on - strand, within rumA at 1305.841 kb on - strand, within rumA at 1305.843 kb on + strand, within rumA at 1305.844 kb on + strand, within rumA at 1305.913 kb on - strand, within rumA at 1306.132 kb on + strand, within rumA at 1306.145 kb on + strand, within rumA at 1306.145 kb on + strand, within rumA at 1306.146 kb on - strand, within rumA at 1306.153 kb on - strand, within rumA at 1306.223 kb on + strand, within rumA at 1306.385 kb on + strand, within rumA at 1306.496 kb on + strand, within rumA at 1306.496 kb on + strand, within rumA at 1306.573 kb on - strand at 1306.785 kb on - strand at 1306.829 kb on + strand at 1306.970 kb on + strand at 1307.009 kb on - strand at 1307.062 kb on + strand at 1307.595 kb on - strand, within Shewana3_1111 at 1307.604 kb on + strand, within Shewana3_1111 at 1307.605 kb on + strand, within Shewana3_1111 at 1307.605 kb on + strand, within Shewana3_1111 at 1307.669 kb on - strand, within Shewana3_1111
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,304,397 - Shewana3_1109 0.71 -0.3 1,304,515 + Shewana3_1109 0.75 -1.2 1,304,546 - Shewana3_1109 0.76 -0.0 1,304,615 + Shewana3_1109 0.78 -0.5 1,304,678 + Shewana3_1109 0.81 +0.7 1,304,681 - Shewana3_1109 0.81 -0.7 1,304,681 - Shewana3_1109 0.81 -0.5 1,304,683 - Shewana3_1109 0.81 +0.3 1,304,823 - Shewana3_1109 0.86 -1.0 1,304,829 - Shewana3_1109 0.86 -0.9 1,304,871 + Shewana3_1109 0.87 -0.4 1,305,071 + +0.2 1,305,192 - +0.7 1,305,194 + -0.1 1,305,218 + +0.5 1,305,218 + -0.5 1,305,218 + -0.6 1,305,425 - -0.6 1,305,528 + rumA Shewana3_1110 0.15 +0.9 1,305,551 - rumA Shewana3_1110 0.17 +0.4 1,305,595 - rumA Shewana3_1110 0.20 -2.1 1,305,841 - rumA Shewana3_1110 0.38 -0.9 1,305,843 + rumA Shewana3_1110 0.38 +1.1 1,305,844 + rumA Shewana3_1110 0.38 +1.1 1,305,913 - rumA Shewana3_1110 0.44 -0.8 1,306,132 + rumA Shewana3_1110 0.60 +1.2 1,306,145 + rumA Shewana3_1110 0.61 +0.0 1,306,145 + rumA Shewana3_1110 0.61 +0.8 1,306,146 - rumA Shewana3_1110 0.61 +0.1 1,306,153 - rumA Shewana3_1110 0.61 -2.2 1,306,223 + rumA Shewana3_1110 0.67 +0.5 1,306,385 + rumA Shewana3_1110 0.79 +0.1 1,306,496 + rumA Shewana3_1110 0.87 +0.5 1,306,496 + rumA Shewana3_1110 0.87 +0.5 1,306,573 - +0.0 1,306,785 - -1.0 1,306,829 + +0.7 1,306,970 + -1.2 1,307,009 - +1.0 1,307,062 + -1.0 1,307,595 - Shewana3_1111 0.33 -4.8 1,307,604 + Shewana3_1111 0.34 -0.3 1,307,605 + Shewana3_1111 0.34 -0.6 1,307,605 + Shewana3_1111 0.34 -1.9 1,307,669 - Shewana3_1111 0.36 +2.0
Or see this region's nucleotide sequence