Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1105 and Shewana3_1106 are separated by 276 nucleotides Shewana3_1106 and Shewana3_1107 are separated by 5 nucleotides Shewana3_1107 and Shewana3_1108 are separated by 363 nucleotides
Shewana3_1105: Shewana3_1105 - transporter, putative (RefSeq), at 1,299,101 to 1,300,063
_1105
Shewana3_1106: Shewana3_1106 - LysR family transcriptional regulator (RefSeq), at 1,300,340 to 1,301,239
_1106
Shewana3_1107: Shewana3_1107 - hypothetical protein (RefSeq), at 1,301,245 to 1,301,478
_1107
Shewana3_1108: Shewana3_1108 - hypothetical protein (RefSeq), at 1,301,842 to 1,302,441
_1108
Position (kb)
1300
1301
1302 Strain fitness (log2 ratio)
-1
0
1
2 at 1299.385 kb on - strand, within Shewana3_1105 at 1299.394 kb on + strand, within Shewana3_1105 at 1299.809 kb on - strand, within Shewana3_1105 at 1299.809 kb on - strand, within Shewana3_1105 at 1300.348 kb on + strand at 1300.379 kb on - strand at 1300.419 kb on + strand at 1300.520 kb on - strand, within Shewana3_1106 at 1300.596 kb on - strand, within Shewana3_1106 at 1300.621 kb on - strand, within Shewana3_1106 at 1300.815 kb on + strand, within Shewana3_1106 at 1300.832 kb on - strand, within Shewana3_1106 at 1300.875 kb on + strand, within Shewana3_1106 at 1301.003 kb on + strand, within Shewana3_1106 at 1301.035 kb on - strand, within Shewana3_1106 at 1301.425 kb on + strand, within Shewana3_1107 at 1301.500 kb on + strand at 1301.515 kb on + strand at 1301.523 kb on - strand at 1301.527 kb on + strand at 1301.527 kb on + strand at 1301.805 kb on + strand at 1301.821 kb on + strand at 1301.829 kb on - strand at 1301.863 kb on + strand at 1302.131 kb on + strand, within Shewana3_1108 at 1302.210 kb on + strand, within Shewana3_1108
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,299,385 - Shewana3_1105 0.29 -0.6 1,299,394 + Shewana3_1105 0.30 +0.0 1,299,809 - Shewana3_1105 0.74 +2.0 1,299,809 - Shewana3_1105 0.74 -1.3 1,300,348 + -0.6 1,300,379 - -1.7 1,300,419 + -0.6 1,300,520 - Shewana3_1106 0.20 +1.0 1,300,596 - Shewana3_1106 0.28 -1.4 1,300,621 - Shewana3_1106 0.31 -1.6 1,300,815 + Shewana3_1106 0.53 -0.9 1,300,832 - Shewana3_1106 0.55 -0.8 1,300,875 + Shewana3_1106 0.59 -0.8 1,301,003 + Shewana3_1106 0.74 -0.4 1,301,035 - Shewana3_1106 0.77 -1.0 1,301,425 + Shewana3_1107 0.77 -1.4 1,301,500 + -0.7 1,301,515 + +0.1 1,301,523 - -0.8 1,301,527 + +1.1 1,301,527 + +0.9 1,301,805 + +0.4 1,301,821 + +1.0 1,301,829 - +0.5 1,301,863 + -1.4 1,302,131 + Shewana3_1108 0.48 +1.0 1,302,210 + Shewana3_1108 0.61 -1.4
Or see this region's nucleotide sequence