Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1090 and Shewana3_1091 are separated by 187 nucleotides Shewana3_1091 and Shewana3_1092 are separated by 264 nucleotides
Shewana3_1090: Shewana3_1090 - beta-lactamase domain-containing protein (RefSeq), at 1,283,202 to 1,284,101
_1090
Shewana3_1091: Shewana3_1091 - LysR family transcriptional regulator (RefSeq), at 1,284,289 to 1,285,212
_1091
Shewana3_1092: Shewana3_1092 - hypothetical protein (RefSeq), at 1,285,477 to 1,286,484
_1092
Position (kb)
1284
1285
1286 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1283.343 kb on + strand, within Shewana3_1090 at 1283.366 kb on + strand, within Shewana3_1090 at 1283.591 kb on + strand, within Shewana3_1090 at 1283.870 kb on - strand, within Shewana3_1090 at 1283.884 kb on - strand, within Shewana3_1090 at 1284.062 kb on - strand at 1284.294 kb on - strand at 1284.506 kb on - strand, within Shewana3_1091 at 1284.731 kb on + strand, within Shewana3_1091 at 1284.904 kb on - strand, within Shewana3_1091 at 1285.297 kb on - strand at 1285.568 kb on + strand at 1285.660 kb on + strand, within Shewana3_1092 at 1285.724 kb on - strand, within Shewana3_1092 at 1285.739 kb on + strand, within Shewana3_1092
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,283,343 + Shewana3_1090 0.16 -2.0 1,283,366 + Shewana3_1090 0.18 -0.6 1,283,591 + Shewana3_1090 0.43 -0.2 1,283,870 - Shewana3_1090 0.74 -2.1 1,283,884 - Shewana3_1090 0.76 -0.7 1,284,062 - -1.0 1,284,294 - +1.0 1,284,506 - Shewana3_1091 0.23 -2.5 1,284,731 + Shewana3_1091 0.48 -0.9 1,284,904 - Shewana3_1091 0.67 -0.6 1,285,297 - +2.0 1,285,568 + +0.9 1,285,660 + Shewana3_1092 0.18 -0.8 1,285,724 - Shewana3_1092 0.25 -0.5 1,285,739 + Shewana3_1092 0.26 -1.6
Or see this region's nucleotide sequence