Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1073 and Shewana3_1074 are separated by 15 nucleotides Shewana3_1074 and Shewana3_1075 are separated by 203 nucleotides Shewana3_1075 and Shewana3_1076 are separated by 88 nucleotides
Shewana3_1073: Shewana3_1073 - LysR family transcriptional regulator (RefSeq), at 1,259,000 to 1,259,908
_1073
Shewana3_1074: Shewana3_1074 - extracellular solute-binding protein (RefSeq), at 1,259,924 to 1,260,742
_1074
Shewana3_1075: Shewana3_1075 - OsmC family protein (RefSeq), at 1,260,946 to 1,261,374
_1075
Shewana3_1076: Shewana3_1076 - TetR family transcriptional regulator (RefSeq), at 1,261,463 to 1,262,083
_1076
Position (kb)
1259
1260
1261 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1259.092 kb on + strand, within Shewana3_1073 at 1259.112 kb on - strand, within Shewana3_1073 at 1259.285 kb on + strand, within Shewana3_1073 at 1259.383 kb on + strand, within Shewana3_1073 at 1259.391 kb on - strand, within Shewana3_1073 at 1259.495 kb on - strand, within Shewana3_1073 at 1259.778 kb on - strand, within Shewana3_1073 at 1259.820 kb on - strand at 1259.866 kb on + strand at 1259.869 kb on - strand at 1259.929 kb on - strand at 1259.931 kb on - strand at 1259.951 kb on - strand at 1260.273 kb on - strand, within Shewana3_1074 at 1260.390 kb on - strand, within Shewana3_1074 at 1260.395 kb on - strand, within Shewana3_1074 at 1260.455 kb on + strand, within Shewana3_1074 at 1260.530 kb on + strand, within Shewana3_1074 at 1260.600 kb on + strand, within Shewana3_1074 at 1260.601 kb on - strand, within Shewana3_1074 at 1261.033 kb on + strand, within Shewana3_1075 at 1261.167 kb on + strand, within Shewana3_1075 at 1261.175 kb on - strand, within Shewana3_1075 at 1261.264 kb on + strand, within Shewana3_1075 at 1261.346 kb on + strand at 1261.346 kb on + strand at 1261.398 kb on + strand at 1261.567 kb on - strand, within Shewana3_1076 at 1261.652 kb on - strand, within Shewana3_1076
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,259,092 + Shewana3_1073 0.10 -0.6 1,259,112 - Shewana3_1073 0.12 -1.4 1,259,285 + Shewana3_1073 0.31 +1.7 1,259,383 + Shewana3_1073 0.42 -0.7 1,259,391 - Shewana3_1073 0.43 +0.1 1,259,495 - Shewana3_1073 0.54 -0.1 1,259,778 - Shewana3_1073 0.86 +0.7 1,259,820 - -2.9 1,259,866 + -1.1 1,259,869 - +0.4 1,259,929 - -0.6 1,259,931 - -0.6 1,259,951 - -1.6 1,260,273 - Shewana3_1074 0.43 -0.6 1,260,390 - Shewana3_1074 0.57 -2.7 1,260,395 - Shewana3_1074 0.58 -2.0 1,260,455 + Shewana3_1074 0.65 -2.0 1,260,530 + Shewana3_1074 0.74 -0.1 1,260,600 + Shewana3_1074 0.83 -1.5 1,260,601 - Shewana3_1074 0.83 -0.3 1,261,033 + Shewana3_1075 0.20 -0.1 1,261,167 + Shewana3_1075 0.52 -0.1 1,261,175 - Shewana3_1075 0.53 +0.8 1,261,264 + Shewana3_1075 0.74 -0.3 1,261,346 + -0.9 1,261,346 + +0.3 1,261,398 + +1.4 1,261,567 - Shewana3_1076 0.17 +1.1 1,261,652 - Shewana3_1076 0.30 +1.0
Or see this region's nucleotide sequence