Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1074

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1073 and Shewana3_1074 are separated by 15 nucleotidesShewana3_1074 and Shewana3_1075 are separated by 203 nucleotidesShewana3_1075 and Shewana3_1076 are separated by 88 nucleotides Shewana3_1073: Shewana3_1073 - LysR family transcriptional regulator (RefSeq), at 1,259,000 to 1,259,908 _1073 Shewana3_1074: Shewana3_1074 - extracellular solute-binding protein (RefSeq), at 1,259,924 to 1,260,742 _1074 Shewana3_1075: Shewana3_1075 - OsmC family protein (RefSeq), at 1,260,946 to 1,261,374 _1075 Shewana3_1076: Shewana3_1076 - TetR family transcriptional regulator (RefSeq), at 1,261,463 to 1,262,083 _1076 Position (kb) 1259 1260 1261Strain fitness (log2 ratio) -3 -2 -1 0 1at 1259.092 kb on + strand, within Shewana3_1073at 1259.112 kb on - strand, within Shewana3_1073at 1259.285 kb on + strand, within Shewana3_1073at 1259.383 kb on + strand, within Shewana3_1073at 1259.391 kb on - strand, within Shewana3_1073at 1259.495 kb on - strand, within Shewana3_1073at 1259.778 kb on - strand, within Shewana3_1073at 1259.820 kb on - strandat 1259.866 kb on + strandat 1259.869 kb on - strandat 1259.929 kb on - strandat 1259.931 kb on - strandat 1259.951 kb on - strandat 1260.273 kb on - strand, within Shewana3_1074at 1260.390 kb on - strand, within Shewana3_1074at 1260.395 kb on - strand, within Shewana3_1074at 1260.455 kb on + strand, within Shewana3_1074at 1260.530 kb on + strand, within Shewana3_1074at 1260.600 kb on + strand, within Shewana3_1074at 1260.601 kb on - strand, within Shewana3_1074at 1261.033 kb on + strand, within Shewana3_1075at 1261.167 kb on + strand, within Shewana3_1075at 1261.175 kb on - strand, within Shewana3_1075at 1261.264 kb on + strand, within Shewana3_1075at 1261.346 kb on + strandat 1261.346 kb on + strandat 1261.398 kb on + strandat 1261.567 kb on - strand, within Shewana3_1076at 1261.652 kb on - strand, within Shewana3_1076

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,259,092 + Shewana3_1073 0.10 -0.6
1,259,112 - Shewana3_1073 0.12 -1.4
1,259,285 + Shewana3_1073 0.31 +1.7
1,259,383 + Shewana3_1073 0.42 -0.7
1,259,391 - Shewana3_1073 0.43 +0.1
1,259,495 - Shewana3_1073 0.54 -0.1
1,259,778 - Shewana3_1073 0.86 +0.7
1,259,820 - -2.9
1,259,866 + -1.1
1,259,869 - +0.4
1,259,929 - -0.6
1,259,931 - -0.6
1,259,951 - -1.6
1,260,273 - Shewana3_1074 0.43 -0.6
1,260,390 - Shewana3_1074 0.57 -2.7
1,260,395 - Shewana3_1074 0.58 -2.0
1,260,455 + Shewana3_1074 0.65 -2.0
1,260,530 + Shewana3_1074 0.74 -0.1
1,260,600 + Shewana3_1074 0.83 -1.5
1,260,601 - Shewana3_1074 0.83 -0.3
1,261,033 + Shewana3_1075 0.20 -0.1
1,261,167 + Shewana3_1075 0.52 -0.1
1,261,175 - Shewana3_1075 0.53 +0.8
1,261,264 + Shewana3_1075 0.74 -0.3
1,261,346 + -0.9
1,261,346 + +0.3
1,261,398 + +1.4
1,261,567 - Shewana3_1076 0.17 +1.1
1,261,652 - Shewana3_1076 0.30 +1.0

Or see this region's nucleotide sequence