Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1035

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1034 and Shewana3_1035 are separated by 218 nucleotidesShewana3_1035 and Shewana3_1036 are separated by 191 nucleotides Shewana3_1034: Shewana3_1034 - diguanylate cyclase/phosphodiesterase (RefSeq), at 1,206,822 to 1,208,846 _1034 Shewana3_1035: Shewana3_1035 - polynucleotide phosphorylase/polyadenylase (RefSeq), at 1,209,065 to 1,211,164 _1035 Shewana3_1036: Shewana3_1036 - lipoprotein NlpI (RefSeq), at 1,211,356 to 1,212,258 _1036 Position (kb) 1209 1210 1211 1212Strain fitness (log2 ratio) -2 -1 0 1at 1208.336 kb on + strand, within Shewana3_1034at 1208.336 kb on + strand, within Shewana3_1034at 1208.344 kb on - strand, within Shewana3_1034at 1208.354 kb on - strand, within Shewana3_1034at 1208.839 kb on + strandat 1208.929 kb on + strandat 1208.937 kb on - strandat 1211.287 kb on + strandat 1211.405 kb on + strandat 1211.931 kb on + strand, within Shewana3_1036at 1212.063 kb on + strand, within Shewana3_1036

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,208,336 + Shewana3_1034 0.75 -1.0
1,208,336 + Shewana3_1034 0.75 -0.5
1,208,344 - Shewana3_1034 0.75 -2.7
1,208,354 - Shewana3_1034 0.76 -0.0
1,208,839 + -0.2
1,208,929 + -0.5
1,208,937 - -1.1
1,211,287 + -0.0
1,211,405 + -0.6
1,211,931 + Shewana3_1036 0.64 +0.6
1,212,063 + Shewana3_1036 0.78 +0.8

Or see this region's nucleotide sequence