Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1014 and Shewana3_1015 are separated by 13 nucleotides Shewana3_1015 and Shewana3_1016 are separated by 29 nucleotides
Shewana3_1014: Shewana3_1014 - hypothetical protein (RefSeq), at 1,186,375 to 1,186,908
_1014
Shewana3_1015: Shewana3_1015 - lysozyme (RefSeq), at 1,186,922 to 1,187,437
_1015
Shewana3_1016: Shewana3_1016 - hypothetical protein (RefSeq), at 1,187,467 to 1,188,285
_1016
Position (kb)
1186
1187
1188 Strain fitness (log2 ratio)
-2
-1
0
1 at 1185.943 kb on - strand at 1186.031 kb on + strand at 1186.420 kb on + strand at 1186.520 kb on - strand, within Shewana3_1014 at 1186.646 kb on + strand, within Shewana3_1014 at 1186.646 kb on + strand, within Shewana3_1014 at 1186.654 kb on - strand, within Shewana3_1014 at 1186.654 kb on - strand, within Shewana3_1014 at 1186.707 kb on + strand, within Shewana3_1014 at 1186.748 kb on + strand, within Shewana3_1014 at 1186.890 kb on + strand at 1187.111 kb on - strand, within Shewana3_1015 at 1187.289 kb on - strand, within Shewana3_1015 at 1187.438 kb on + strand at 1187.594 kb on + strand, within Shewana3_1016 at 1187.672 kb on - strand, within Shewana3_1016 at 1187.751 kb on - strand, within Shewana3_1016 at 1187.913 kb on + strand, within Shewana3_1016 at 1188.358 kb on + strand at 1188.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,185,943 - -0.0 1,186,031 + -1.4 1,186,420 + -0.8 1,186,520 - Shewana3_1014 0.27 -0.7 1,186,646 + Shewana3_1014 0.51 -1.3 1,186,646 + Shewana3_1014 0.51 +0.2 1,186,654 - Shewana3_1014 0.52 -1.8 1,186,654 - Shewana3_1014 0.52 +1.0 1,186,707 + Shewana3_1014 0.62 +1.4 1,186,748 + Shewana3_1014 0.70 +0.8 1,186,890 + -0.1 1,187,111 - Shewana3_1015 0.37 -1.0 1,187,289 - Shewana3_1015 0.71 -2.1 1,187,438 + -0.7 1,187,594 + Shewana3_1016 0.16 +0.2 1,187,672 - Shewana3_1016 0.25 -2.7 1,187,751 - Shewana3_1016 0.35 +0.4 1,187,913 + Shewana3_1016 0.54 +1.6 1,188,358 + -1.0 1,188,358 + -0.7
Or see this region's nucleotide sequence