Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0974 and Shewana3_0975 overlap by 4 nucleotides Shewana3_0975 and Shewana3_0976 are separated by 78 nucleotides Shewana3_0976 and Shewana3_0977 are separated by 468 nucleotides
Shewana3_0974: Shewana3_0974 - hypothetical protein (RefSeq), at 1,144,996 to 1,145,811
_0974
Shewana3_0975: Shewana3_0975 - hypothetical protein (RefSeq), at 1,145,808 to 1,146,689
_0975
Shewana3_0976: Shewana3_0976 - putative lipoprotein (RefSeq), at 1,146,768 to 1,147,220
_0976
Shewana3_0977: Shewana3_0977 - SAM-dependent methyltransferase (RefSeq), at 1,147,689 to 1,148,879
_0977
Position (kb)
1146
1147
1148 Strain fitness (log2 ratio)
-2
-1
0
1 at 1145.833 kb on + strand at 1146.287 kb on + strand, within Shewana3_0975 at 1146.344 kb on - strand, within Shewana3_0975 at 1146.379 kb on - strand, within Shewana3_0975 at 1146.408 kb on + strand, within Shewana3_0975 at 1146.409 kb on + strand, within Shewana3_0975 at 1146.451 kb on + strand, within Shewana3_0975 at 1146.464 kb on + strand, within Shewana3_0975 at 1146.472 kb on - strand, within Shewana3_0975 at 1146.477 kb on - strand, within Shewana3_0975 at 1146.559 kb on + strand, within Shewana3_0975 at 1146.668 kb on + strand at 1146.698 kb on - strand at 1146.698 kb on - strand at 1146.856 kb on - strand, within Shewana3_0976 at 1146.866 kb on - strand, within Shewana3_0976 at 1146.866 kb on - strand, within Shewana3_0976 at 1146.890 kb on - strand, within Shewana3_0976 at 1146.993 kb on - strand, within Shewana3_0976 at 1146.994 kb on + strand, within Shewana3_0976 at 1147.044 kb on - strand, within Shewana3_0976 at 1147.096 kb on - strand, within Shewana3_0976 at 1147.125 kb on + strand, within Shewana3_0976 at 1147.181 kb on + strand at 1147.783 kb on - strand at 1148.078 kb on - strand, within Shewana3_0977 at 1148.198 kb on - strand, within Shewana3_0977
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,145,833 + -0.4 1,146,287 + Shewana3_0975 0.54 +1.2 1,146,344 - Shewana3_0975 0.61 -1.8 1,146,379 - Shewana3_0975 0.65 -0.3 1,146,408 + Shewana3_0975 0.68 -2.2 1,146,409 + Shewana3_0975 0.68 -0.9 1,146,451 + Shewana3_0975 0.73 +0.3 1,146,464 + Shewana3_0975 0.74 +0.1 1,146,472 - Shewana3_0975 0.75 -2.5 1,146,477 - Shewana3_0975 0.76 -1.7 1,146,559 + Shewana3_0975 0.85 -2.5 1,146,668 + -1.4 1,146,698 - -0.3 1,146,698 - -0.8 1,146,856 - Shewana3_0976 0.19 +0.9 1,146,866 - Shewana3_0976 0.22 -0.3 1,146,866 - Shewana3_0976 0.22 +0.6 1,146,890 - Shewana3_0976 0.27 +0.5 1,146,993 - Shewana3_0976 0.50 +0.5 1,146,994 + Shewana3_0976 0.50 -1.1 1,147,044 - Shewana3_0976 0.61 +0.4 1,147,096 - Shewana3_0976 0.72 +0.1 1,147,125 + Shewana3_0976 0.79 +0.6 1,147,181 + +0.1 1,147,783 - -2.0 1,148,078 - Shewana3_0977 0.33 -0.7 1,148,198 - Shewana3_0977 0.43 -0.9
Or see this region's nucleotide sequence