Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0948

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0946 and Shewana3_0947 are separated by 9 nucleotidesShewana3_0947 and Shewana3_0948 are separated by 299 nucleotidesShewana3_0948 and Shewana3_0949 are separated by 150 nucleotides Shewana3_0946: Shewana3_0946 - bacterioferritin (RefSeq), at 1,106,631 to 1,107,104 _0946 Shewana3_0947: Shewana3_0947 - bacterioferritin (RefSeq), at 1,107,114 to 1,107,581 _0947 Shewana3_0948: Shewana3_0948 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,107,881 to 1,109,884 _0948 Shewana3_0949: Shewana3_0949 - DNA polymerase IV (RefSeq), at 1,110,035 to 1,111,114 _0949 Position (kb) 1107 1108 1109 1110Strain fitness (log2 ratio) -2 -1 0 1at 1106.884 kb on - strand, within Shewana3_0946at 1106.941 kb on + strand, within Shewana3_0946at 1106.941 kb on + strand, within Shewana3_0946at 1106.941 kb on + strand, within Shewana3_0946at 1106.941 kb on + strand, within Shewana3_0946at 1106.949 kb on - strand, within Shewana3_0946at 1107.180 kb on + strand, within Shewana3_0947at 1107.331 kb on + strand, within Shewana3_0947at 1107.402 kb on - strand, within Shewana3_0947at 1107.536 kb on + strandat 1107.584 kb on + strandat 1107.584 kb on - strandat 1107.668 kb on - strandat 1107.996 kb on + strandat 1108.300 kb on + strand, within Shewana3_0948at 1108.308 kb on - strand, within Shewana3_0948at 1108.446 kb on + strand, within Shewana3_0948at 1108.640 kb on - strand, within Shewana3_0948at 1108.655 kb on - strand, within Shewana3_0948at 1108.704 kb on + strand, within Shewana3_0948at 1109.086 kb on + strand, within Shewana3_0948at 1109.087 kb on - strand, within Shewana3_0948at 1109.132 kb on - strand, within Shewana3_0948at 1109.378 kb on + strand, within Shewana3_0948at 1109.566 kb on - strand, within Shewana3_0948at 1109.588 kb on + strand, within Shewana3_0948at 1109.619 kb on - strand, within Shewana3_0948at 1109.732 kb on + strandat 1109.955 kb on + strandat 1110.317 kb on + strand, within Shewana3_0949at 1110.317 kb on + strand, within Shewana3_0949at 1110.325 kb on - strand, within Shewana3_0949at 1110.351 kb on + strand, within Shewana3_0949at 1110.384 kb on - strand, within Shewana3_0949at 1110.527 kb on - strand, within Shewana3_0949at 1110.527 kb on - strand, within Shewana3_0949at 1110.646 kb on + strand, within Shewana3_0949at 1110.646 kb on + strand, within Shewana3_0949at 1110.798 kb on + strand, within Shewana3_0949at 1110.841 kb on - strand, within Shewana3_0949at 1110.873 kb on - strand, within Shewana3_0949

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,106,884 - Shewana3_0946 0.53 -0.1
1,106,941 + Shewana3_0946 0.65 -0.2
1,106,941 + Shewana3_0946 0.65 +0.6
1,106,941 + Shewana3_0946 0.65 -0.1
1,106,941 + Shewana3_0946 0.65 +0.6
1,106,949 - Shewana3_0946 0.67 -0.6
1,107,180 + Shewana3_0947 0.14 +0.6
1,107,331 + Shewana3_0947 0.46 +0.1
1,107,402 - Shewana3_0947 0.62 -2.0
1,107,536 + -0.3
1,107,584 + +0.6
1,107,584 - +0.9
1,107,668 - +0.1
1,107,996 + -0.3
1,108,300 + Shewana3_0948 0.21 +0.3
1,108,308 - Shewana3_0948 0.21 -1.2
1,108,446 + Shewana3_0948 0.28 +0.3
1,108,640 - Shewana3_0948 0.38 -0.7
1,108,655 - Shewana3_0948 0.39 -1.1
1,108,704 + Shewana3_0948 0.41 -0.3
1,109,086 + Shewana3_0948 0.60 +1.2
1,109,087 - Shewana3_0948 0.60 -0.1
1,109,132 - Shewana3_0948 0.62 -1.1
1,109,378 + Shewana3_0948 0.75 +0.7
1,109,566 - Shewana3_0948 0.84 -0.3
1,109,588 + Shewana3_0948 0.85 +1.4
1,109,619 - Shewana3_0948 0.87 -0.0
1,109,732 + +0.3
1,109,955 + +0.9
1,110,317 + Shewana3_0949 0.26 +0.9
1,110,317 + Shewana3_0949 0.26 -0.0
1,110,325 - Shewana3_0949 0.27 -0.9
1,110,351 + Shewana3_0949 0.29 -0.2
1,110,384 - Shewana3_0949 0.32 -1.5
1,110,527 - Shewana3_0949 0.46 -0.9
1,110,527 - Shewana3_0949 0.46 -1.0
1,110,646 + Shewana3_0949 0.57 +0.3
1,110,646 + Shewana3_0949 0.57 +0.3
1,110,798 + Shewana3_0949 0.71 -0.3
1,110,841 - Shewana3_0949 0.75 -0.9
1,110,873 - Shewana3_0949 0.78 -2.7

Or see this region's nucleotide sequence