Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0946 and Shewana3_0947 are separated by 9 nucleotides Shewana3_0947 and Shewana3_0948 are separated by 299 nucleotides Shewana3_0948 and Shewana3_0949 are separated by 150 nucleotides
Shewana3_0946: Shewana3_0946 - bacterioferritin (RefSeq), at 1,106,631 to 1,107,104
_0946
Shewana3_0947: Shewana3_0947 - bacterioferritin (RefSeq), at 1,107,114 to 1,107,581
_0947
Shewana3_0948: Shewana3_0948 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,107,881 to 1,109,884
_0948
Shewana3_0949: Shewana3_0949 - DNA polymerase IV (RefSeq), at 1,110,035 to 1,111,114
_0949
Position (kb)
1107
1108
1109
1110 Strain fitness (log2 ratio)
-2
-1
0
1 at 1106.884 kb on - strand, within Shewana3_0946 at 1106.941 kb on + strand, within Shewana3_0946 at 1106.941 kb on + strand, within Shewana3_0946 at 1106.941 kb on + strand, within Shewana3_0946 at 1106.941 kb on + strand, within Shewana3_0946 at 1106.949 kb on - strand, within Shewana3_0946 at 1107.180 kb on + strand, within Shewana3_0947 at 1107.331 kb on + strand, within Shewana3_0947 at 1107.402 kb on - strand, within Shewana3_0947 at 1107.536 kb on + strand at 1107.584 kb on + strand at 1107.584 kb on - strand at 1107.668 kb on - strand at 1107.996 kb on + strand at 1108.300 kb on + strand, within Shewana3_0948 at 1108.308 kb on - strand, within Shewana3_0948 at 1108.446 kb on + strand, within Shewana3_0948 at 1108.640 kb on - strand, within Shewana3_0948 at 1108.655 kb on - strand, within Shewana3_0948 at 1108.704 kb on + strand, within Shewana3_0948 at 1109.086 kb on + strand, within Shewana3_0948 at 1109.087 kb on - strand, within Shewana3_0948 at 1109.132 kb on - strand, within Shewana3_0948 at 1109.378 kb on + strand, within Shewana3_0948 at 1109.566 kb on - strand, within Shewana3_0948 at 1109.588 kb on + strand, within Shewana3_0948 at 1109.619 kb on - strand, within Shewana3_0948 at 1109.732 kb on + strand at 1109.955 kb on + strand at 1110.317 kb on + strand, within Shewana3_0949 at 1110.317 kb on + strand, within Shewana3_0949 at 1110.325 kb on - strand, within Shewana3_0949 at 1110.351 kb on + strand, within Shewana3_0949 at 1110.384 kb on - strand, within Shewana3_0949 at 1110.527 kb on - strand, within Shewana3_0949 at 1110.527 kb on - strand, within Shewana3_0949 at 1110.646 kb on + strand, within Shewana3_0949 at 1110.646 kb on + strand, within Shewana3_0949 at 1110.798 kb on + strand, within Shewana3_0949 at 1110.841 kb on - strand, within Shewana3_0949 at 1110.873 kb on - strand, within Shewana3_0949
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,106,884 - Shewana3_0946 0.53 -0.1 1,106,941 + Shewana3_0946 0.65 -0.2 1,106,941 + Shewana3_0946 0.65 +0.6 1,106,941 + Shewana3_0946 0.65 -0.1 1,106,941 + Shewana3_0946 0.65 +0.6 1,106,949 - Shewana3_0946 0.67 -0.6 1,107,180 + Shewana3_0947 0.14 +0.6 1,107,331 + Shewana3_0947 0.46 +0.1 1,107,402 - Shewana3_0947 0.62 -2.0 1,107,536 + -0.3 1,107,584 + +0.6 1,107,584 - +0.9 1,107,668 - +0.1 1,107,996 + -0.3 1,108,300 + Shewana3_0948 0.21 +0.3 1,108,308 - Shewana3_0948 0.21 -1.2 1,108,446 + Shewana3_0948 0.28 +0.3 1,108,640 - Shewana3_0948 0.38 -0.7 1,108,655 - Shewana3_0948 0.39 -1.1 1,108,704 + Shewana3_0948 0.41 -0.3 1,109,086 + Shewana3_0948 0.60 +1.2 1,109,087 - Shewana3_0948 0.60 -0.1 1,109,132 - Shewana3_0948 0.62 -1.1 1,109,378 + Shewana3_0948 0.75 +0.7 1,109,566 - Shewana3_0948 0.84 -0.3 1,109,588 + Shewana3_0948 0.85 +1.4 1,109,619 - Shewana3_0948 0.87 -0.0 1,109,732 + +0.3 1,109,955 + +0.9 1,110,317 + Shewana3_0949 0.26 +0.9 1,110,317 + Shewana3_0949 0.26 -0.0 1,110,325 - Shewana3_0949 0.27 -0.9 1,110,351 + Shewana3_0949 0.29 -0.2 1,110,384 - Shewana3_0949 0.32 -1.5 1,110,527 - Shewana3_0949 0.46 -0.9 1,110,527 - Shewana3_0949 0.46 -1.0 1,110,646 + Shewana3_0949 0.57 +0.3 1,110,646 + Shewana3_0949 0.57 +0.3 1,110,798 + Shewana3_0949 0.71 -0.3 1,110,841 - Shewana3_0949 0.75 -0.9 1,110,873 - Shewana3_0949 0.78 -2.7
Or see this region's nucleotide sequence