Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0932 and Shewana3_0933 are separated by 189 nucleotides Shewana3_0933 and Shewana3_0934 are separated by 134 nucleotides Shewana3_0934 and Shewana3_0935 are separated by 260 nucleotides
Shewana3_0932: Shewana3_0932 - methyltransferase small (RefSeq), at 1,092,050 to 1,093,183
_0932
Shewana3_0933: Shewana3_0933 - DNA-N1-methyladenine dioxygenase (RefSeq), at 1,093,373 to 1,094,032
_0933
Shewana3_0934: Shewana3_0934 - transcriptional regulator BolA (RefSeq), at 1,094,167 to 1,094,487
_0934
Shewana3_0935: Shewana3_0935 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,094,748 to 1,095,860
_0935
Position (kb)
1093
1094
1095 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1092.420 kb on + strand, within Shewana3_0932 at 1092.428 kb on - strand, within Shewana3_0932 at 1092.689 kb on + strand, within Shewana3_0932 at 1092.749 kb on + strand, within Shewana3_0932 at 1093.063 kb on + strand, within Shewana3_0932 at 1093.149 kb on + strand at 1093.292 kb on + strand at 1093.346 kb on - strand at 1093.359 kb on + strand at 1093.361 kb on + strand at 1093.371 kb on + strand at 1093.374 kb on - strand at 1093.432 kb on + strand at 1093.510 kb on + strand, within Shewana3_0933 at 1093.522 kb on + strand, within Shewana3_0933 at 1093.529 kb on - strand, within Shewana3_0933 at 1093.530 kb on - strand, within Shewana3_0933 at 1093.537 kb on + strand, within Shewana3_0933 at 1093.588 kb on - strand, within Shewana3_0933 at 1093.762 kb on + strand, within Shewana3_0933 at 1093.900 kb on - strand, within Shewana3_0933 at 1093.916 kb on + strand, within Shewana3_0933 at 1093.972 kb on + strand at 1093.980 kb on - strand at 1094.074 kb on + strand at 1094.074 kb on + strand at 1094.082 kb on - strand at 1094.082 kb on - strand at 1094.177 kb on + strand at 1094.187 kb on + strand at 1094.212 kb on - strand, within Shewana3_0934 at 1094.424 kb on - strand, within Shewana3_0934 at 1094.431 kb on - strand, within Shewana3_0934 at 1094.433 kb on + strand, within Shewana3_0934 at 1094.669 kb on + strand at 1094.682 kb on - strand at 1094.731 kb on + strand at 1094.799 kb on + strand at 1094.801 kb on + strand at 1094.801 kb on + strand at 1094.801 kb on + strand at 1094.809 kb on - strand at 1094.833 kb on + strand at 1094.841 kb on + strand at 1094.916 kb on + strand, within Shewana3_0935 at 1094.993 kb on - strand, within Shewana3_0935
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,092,420 + Shewana3_0932 0.33 -0.4 1,092,428 - Shewana3_0932 0.33 +0.1 1,092,689 + Shewana3_0932 0.56 -1.1 1,092,749 + Shewana3_0932 0.62 -1.0 1,093,063 + Shewana3_0932 0.89 -1.3 1,093,149 + -1.1 1,093,292 + +0.9 1,093,346 - -0.9 1,093,359 + +0.4 1,093,361 + +1.1 1,093,371 + +0.3 1,093,374 - -1.6 1,093,432 + -0.4 1,093,510 + Shewana3_0933 0.21 -0.3 1,093,522 + Shewana3_0933 0.23 -0.3 1,093,529 - Shewana3_0933 0.24 -0.0 1,093,530 - Shewana3_0933 0.24 +0.5 1,093,537 + Shewana3_0933 0.25 +0.1 1,093,588 - Shewana3_0933 0.33 +0.4 1,093,762 + Shewana3_0933 0.59 +0.3 1,093,900 - Shewana3_0933 0.80 +0.4 1,093,916 + Shewana3_0933 0.82 +0.3 1,093,972 + -1.2 1,093,980 - -0.4 1,094,074 + -0.4 1,094,074 + -0.3 1,094,082 - -1.3 1,094,082 - -2.1 1,094,177 + +0.9 1,094,187 + +0.5 1,094,212 - Shewana3_0934 0.14 -0.6 1,094,424 - Shewana3_0934 0.80 -3.5 1,094,431 - Shewana3_0934 0.82 +0.3 1,094,433 + Shewana3_0934 0.83 +0.3 1,094,669 + -0.5 1,094,682 - +1.0 1,094,731 + -0.3 1,094,799 + +1.2 1,094,801 + -0.2 1,094,801 + -0.4 1,094,801 + -1.3 1,094,809 - +0.3 1,094,833 + -0.2 1,094,841 + -0.8 1,094,916 + Shewana3_0935 0.15 -0.9 1,094,993 - Shewana3_0935 0.22 +0.9
Or see this region's nucleotide sequence