Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0900

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0899 and Shewana3_0900 are separated by 9 nucleotidesShewana3_0900 and Shewana3_0901 are separated by 62 nucleotidesShewana3_0901 and Shewana3_0902 are separated by 9 nucleotides Shewana3_0899: Shewana3_0899 - TPR repeat-containing protein (RefSeq), at 1,050,067 to 1,051,467 _0899 Shewana3_0900: Shewana3_0900 - peptide deformylase (RefSeq), at 1,051,477 to 1,052,007 _0900 Shewana3_0901: Shewana3_0901 - SlyX family protein (RefSeq), at 1,052,070 to 1,052,282 _0901 Shewana3_0902: Shewana3_0902 - WD-40 repeat-containing protein (RefSeq), at 1,052,292 to 1,053,242 _0902 Position (kb) 1051 1052 1053Strain fitness (log2 ratio) -3 -2 -1 0 1at 1050.524 kb on - strand, within Shewana3_0899at 1050.524 kb on - strand, within Shewana3_0899at 1050.568 kb on - strand, within Shewana3_0899at 1050.633 kb on - strand, within Shewana3_0899at 1050.653 kb on - strand, within Shewana3_0899at 1050.758 kb on + strand, within Shewana3_0899at 1050.793 kb on + strand, within Shewana3_0899at 1050.801 kb on - strand, within Shewana3_0899at 1050.801 kb on - strand, within Shewana3_0899at 1050.911 kb on + strand, within Shewana3_0899at 1050.929 kb on - strand, within Shewana3_0899at 1050.954 kb on + strand, within Shewana3_0899at 1050.954 kb on + strand, within Shewana3_0899at 1050.962 kb on - strand, within Shewana3_0899at 1051.068 kb on - strand, within Shewana3_0899at 1051.068 kb on - strand, within Shewana3_0899at 1051.071 kb on + strand, within Shewana3_0899at 1051.141 kb on + strand, within Shewana3_0899at 1051.179 kb on - strand, within Shewana3_0899at 1051.375 kb on + strandat 1051.383 kb on - strandat 1051.413 kb on + strandat 1051.537 kb on - strand, within Shewana3_0900at 1051.822 kb on + strand, within Shewana3_0900at 1051.917 kb on + strand, within Shewana3_0900at 1051.932 kb on + strand, within Shewana3_0900at 1051.982 kb on + strandat 1051.993 kb on - strandat 1052.211 kb on + strand, within Shewana3_0901at 1052.289 kb on + strandat 1052.310 kb on + strandat 1052.367 kb on + strandat 1052.375 kb on - strandat 1052.380 kb on - strandat 1052.459 kb on - strand, within Shewana3_0902at 1052.615 kb on + strand, within Shewana3_0902at 1052.615 kb on + strand, within Shewana3_0902at 1052.623 kb on - strand, within Shewana3_0902at 1052.668 kb on + strand, within Shewana3_0902at 1052.760 kb on + strand, within Shewana3_0902

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,050,524 - Shewana3_0899 0.33 +0.7
1,050,524 - Shewana3_0899 0.33 -0.3
1,050,568 - Shewana3_0899 0.36 +0.4
1,050,633 - Shewana3_0899 0.40 +0.8
1,050,653 - Shewana3_0899 0.42 +0.3
1,050,758 + Shewana3_0899 0.49 -0.0
1,050,793 + Shewana3_0899 0.52 -0.6
1,050,801 - Shewana3_0899 0.52 +1.3
1,050,801 - Shewana3_0899 0.52 +0.6
1,050,911 + Shewana3_0899 0.60 -0.7
1,050,929 - Shewana3_0899 0.62 -0.4
1,050,954 + Shewana3_0899 0.63 -0.3
1,050,954 + Shewana3_0899 0.63 -0.6
1,050,962 - Shewana3_0899 0.64 +0.6
1,051,068 - Shewana3_0899 0.71 +0.5
1,051,068 - Shewana3_0899 0.71 +0.5
1,051,071 + Shewana3_0899 0.72 -0.9
1,051,141 + Shewana3_0899 0.77 +0.2
1,051,179 - Shewana3_0899 0.79 +0.8
1,051,375 + -3.0
1,051,383 - -1.2
1,051,413 + -3.5
1,051,537 - Shewana3_0900 0.11 -1.1
1,051,822 + Shewana3_0900 0.65 -0.3
1,051,917 + Shewana3_0900 0.83 -2.6
1,051,932 + Shewana3_0900 0.86 -1.2
1,051,982 + -2.7
1,051,993 - +0.7
1,052,211 + Shewana3_0901 0.66 -0.9
1,052,289 + -0.9
1,052,310 + -1.5
1,052,367 + -1.1
1,052,375 - -0.2
1,052,380 - +0.6
1,052,459 - Shewana3_0902 0.18 -0.9
1,052,615 + Shewana3_0902 0.34 +0.3
1,052,615 + Shewana3_0902 0.34 -1.4
1,052,623 - Shewana3_0902 0.35 +0.9
1,052,668 + Shewana3_0902 0.40 -0.8
1,052,760 + Shewana3_0902 0.49 -0.3

Or see this region's nucleotide sequence