Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0899 and Shewana3_0900 are separated by 9 nucleotides Shewana3_0900 and Shewana3_0901 are separated by 62 nucleotides Shewana3_0901 and Shewana3_0902 are separated by 9 nucleotides
Shewana3_0899: Shewana3_0899 - TPR repeat-containing protein (RefSeq), at 1,050,067 to 1,051,467
_0899
Shewana3_0900: Shewana3_0900 - peptide deformylase (RefSeq), at 1,051,477 to 1,052,007
_0900
Shewana3_0901: Shewana3_0901 - SlyX family protein (RefSeq), at 1,052,070 to 1,052,282
_0901
Shewana3_0902: Shewana3_0902 - WD-40 repeat-containing protein (RefSeq), at 1,052,292 to 1,053,242
_0902
Position (kb)
1051
1052
1053 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1050.524 kb on - strand, within Shewana3_0899 at 1050.524 kb on - strand, within Shewana3_0899 at 1050.568 kb on - strand, within Shewana3_0899 at 1050.633 kb on - strand, within Shewana3_0899 at 1050.653 kb on - strand, within Shewana3_0899 at 1050.758 kb on + strand, within Shewana3_0899 at 1050.793 kb on + strand, within Shewana3_0899 at 1050.801 kb on - strand, within Shewana3_0899 at 1050.801 kb on - strand, within Shewana3_0899 at 1050.911 kb on + strand, within Shewana3_0899 at 1050.929 kb on - strand, within Shewana3_0899 at 1050.954 kb on + strand, within Shewana3_0899 at 1050.954 kb on + strand, within Shewana3_0899 at 1050.962 kb on - strand, within Shewana3_0899 at 1051.068 kb on - strand, within Shewana3_0899 at 1051.068 kb on - strand, within Shewana3_0899 at 1051.071 kb on + strand, within Shewana3_0899 at 1051.141 kb on + strand, within Shewana3_0899 at 1051.179 kb on - strand, within Shewana3_0899 at 1051.375 kb on + strand at 1051.383 kb on - strand at 1051.413 kb on + strand at 1051.537 kb on - strand, within Shewana3_0900 at 1051.822 kb on + strand, within Shewana3_0900 at 1051.917 kb on + strand, within Shewana3_0900 at 1051.932 kb on + strand, within Shewana3_0900 at 1051.982 kb on + strand at 1051.993 kb on - strand at 1052.211 kb on + strand, within Shewana3_0901 at 1052.289 kb on + strand at 1052.310 kb on + strand at 1052.367 kb on + strand at 1052.375 kb on - strand at 1052.380 kb on - strand at 1052.459 kb on - strand, within Shewana3_0902 at 1052.615 kb on + strand, within Shewana3_0902 at 1052.615 kb on + strand, within Shewana3_0902 at 1052.623 kb on - strand, within Shewana3_0902 at 1052.668 kb on + strand, within Shewana3_0902 at 1052.760 kb on + strand, within Shewana3_0902
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,050,524 - Shewana3_0899 0.33 +0.7 1,050,524 - Shewana3_0899 0.33 -0.3 1,050,568 - Shewana3_0899 0.36 +0.4 1,050,633 - Shewana3_0899 0.40 +0.8 1,050,653 - Shewana3_0899 0.42 +0.3 1,050,758 + Shewana3_0899 0.49 -0.0 1,050,793 + Shewana3_0899 0.52 -0.6 1,050,801 - Shewana3_0899 0.52 +1.3 1,050,801 - Shewana3_0899 0.52 +0.6 1,050,911 + Shewana3_0899 0.60 -0.7 1,050,929 - Shewana3_0899 0.62 -0.4 1,050,954 + Shewana3_0899 0.63 -0.3 1,050,954 + Shewana3_0899 0.63 -0.6 1,050,962 - Shewana3_0899 0.64 +0.6 1,051,068 - Shewana3_0899 0.71 +0.5 1,051,068 - Shewana3_0899 0.71 +0.5 1,051,071 + Shewana3_0899 0.72 -0.9 1,051,141 + Shewana3_0899 0.77 +0.2 1,051,179 - Shewana3_0899 0.79 +0.8 1,051,375 + -3.0 1,051,383 - -1.2 1,051,413 + -3.5 1,051,537 - Shewana3_0900 0.11 -1.1 1,051,822 + Shewana3_0900 0.65 -0.3 1,051,917 + Shewana3_0900 0.83 -2.6 1,051,932 + Shewana3_0900 0.86 -1.2 1,051,982 + -2.7 1,051,993 - +0.7 1,052,211 + Shewana3_0901 0.66 -0.9 1,052,289 + -0.9 1,052,310 + -1.5 1,052,367 + -1.1 1,052,375 - -0.2 1,052,380 - +0.6 1,052,459 - Shewana3_0902 0.18 -0.9 1,052,615 + Shewana3_0902 0.34 +0.3 1,052,615 + Shewana3_0902 0.34 -1.4 1,052,623 - Shewana3_0902 0.35 +0.9 1,052,668 + Shewana3_0902 0.40 -0.8 1,052,760 + Shewana3_0902 0.49 -0.3
Or see this region's nucleotide sequence